[Home] | [Total List]

[190325_at]

Description F58E1.1 /REP_DB=WormBase Gene ID /WP=CE11372 /TR=Q9TZF8 /GB=AAC67479.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=reverse transcriptase
Cluster 6grp_total > 81      4grp_total > 40      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 5.7
(-2.9)
A 		8.3
(-2.4)
A 		5.3
(-3)
A 		34.2
(3)
A 		29
B 31.4
(0.6)
A 		27.9
(0.2)
A 		50.1
(3)
A 		3.3
(-3)
A 		47
C 11.4
(-2.4)
A 		10.1
(-3)
A 		22.2
(3)
A 		21.8
(2.8)
A 		12
avr 16.2
(-2.5) 		15.4
(-3) 		25.9
(3) 		19.8
(-0.5) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 11.5
(-0.8)
A 		15.2
(0.1)
A 		4.3
(-2.8)
A 		8.6
(-1.6)
A 		25.9
(3)
A 		3.4
(-3)
A 		23
B 6.6
(-2.4)
A 		22.4
(3)
A 		6.5
(-2.4)
A 		4.8
(-3)
A 		7.7
(-2)
A 		5.2
(-2.9)
A 		18
C 9.5
(-1.8)
A 		3
(-2.7)
A 		19.4
(-0.3)
A 		42
(3)
A 		1.3
(-3)
A 		6.6
(-2.2)
A 		41
avr 9.2
(-1.2) 		13.5
(0.8) 		10.1
(-0.8) 		18.5
(3) 		11.6
(-0.1) 		5.1
(-3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.1
(-1.8)
A 		1.8
(-2.3)
A 		1.4
(-3)
A 		5
(3)
A 		4
B 10
(2.1)
A 		6.9
(0.4)
A 		11.6
(3)
A 		0.7
(-3)
A 		11
C 3.8
(-1.9)
A 		2.9
(-3)
A 		7.7
(3)
A 		3.7
(-2)
A 		5
avr 5.3
(0.5) 		3.9
(-1.7) 		6.9
(3) 		3.1
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 2.1
(-1.9)
A 		5.4
(0.9)
A 		0.9
(-2.9)
A 		2.2
(-1.8)
A 		7.8
(3)
A 		0.8
(-3)
A 		7
B 2.3
(-2)
A 		7.5
(3)
A 		1.6
(-2.7)
A 		1.3
(-3)
A 		3.1
(-1.3)
A 		1.9
(-2.4)
A 		6
C 3.5
(-0.7)
A 		0.9
(-2.6)
A 		4.9
(0.3)
A 		8.5
(3)
A 		0.4
(-3)
A 		2.2
(-1.7)
A 		8
avr 2.6
(-1) 		4.6
(3) 		2.5
(-1.2) 		4
(1.8) 		3.8
(1.4) 		1.6
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190325_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4488
Sequence Type Exemplar sequence
Representative Public ID F58E1.1 NCBI
Target Description F58E1.1 /REP_DB=WormBase Gene ID /WP=CE11372 /TR=Q9TZF8 /GB=AAC67479.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=reverse transcriptase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061646(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061646 NCBI Caenorhabditis elegans F58E1.1 (F58E1.1) mRNA, complete cds. 11/11 None
F58E1.1 ENSEMBL cdna:known chromosome:CEL140:II:1697907:1699212:1 gene:F58E1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Ensembl F58E1.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494047 F58E1.1 [Caenorhabditis elegans] 1.0E-171
blast NP_494684 F53C3.9 [Caenorhabditis elegans] 1.0E-152
blast S42831 F40F12.2 protein - Caenorhabditis elegans 1.0E-123
Protein Domains
Database ID Description E-Value
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 1.9E-31
Sequence
Target Sequence 
>C. ELEGANS:190325_AT
atccccaactgtccgagatttaggtcttatcacagattgtaaaataaactttgaacctca
tattataaaaattagctgcctagccatgcttaggactaaacaaattctcaaagcgttctc
ttccaactcccacaaattttatagtcacctattcaaaacctacgttgtccccattataaa
ctattgctctgaggtttactccccttccccaaactcatcactctcggccatacttgaaaa
accactgaggaccttcaccaaacgcgtcctgcaaaggtgcaacgttaaatccacctctta
cgaaaacagactgtgtatcatgaaactattctccaccagacacactagaattaaagctca
aatgaatctattatatagacttctaaccggttctacacatttctttaaatcaaatcagtt
tgtaaagttctctaattccaataggagacccatgattcttgttaggaaagacacctgctc
ctcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCCCAACTGTCCGAGATTTAGGT 337 39 399 Antisense
AACTGTCCGAGATTTAGGTCTTATC 402 137 405 Antisense
TCCAACTCCCACAAATTTTATAGTC 703 587 520 Antisense
ATAGTCACCTATTCAAAACCTACGT 566 19 539 Antisense
TATTCAAAACCTACGTTGTCCCCAT 116 655 548 Antisense
TTGTCCCCATTATAAACTATTGCTC 653 685 563 Antisense
AACTATTGCTCTGAGGTTTACTCCC 638 137 577 Antisense
TGTATCATGAAACTATTCTCCACCA 257 561 712 Antisense
TATAGACTTCTAACCGGTTCTACAC 654 659 772 Antisense
TCTAACCGGTTCTACACATTTCTTT 64 607 780 Antisense
TGTTAGGAAAGACACCTGCTCCTCG 684 557 858 Antisense
Sequence Source Affymetrix Proprietary Database