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[190324_at] ATP binding protein

Description E02H1.6 /REP_DB=WormBase Gene ID /WP=CE28286 /TR=SW:Q09527 /GB=CAA87383.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=ATP binding protein
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 58      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 90      6grp_total > 59      4grp_total > 52      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 245.7
(2.1)
P 		261.8
(3)
P 		151.7
(-3)
P 		161.3
(-2.5)
P 		110
B 250.2
(3)
P 		205.1
(0.8)
P 		194.8
(0.3)
P 		126.1
(-3)
P 		124
C 226.1
(0.8)
P 		265.6
(3)
P 		244.9
(1.8)
P 		158.3
(-3)
P 		107
avr 240.7
(2.8) 		244.2
(3) 		197.1
(0) 		148.6
(-3) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 153.4
(-0.6)
P 		136.5
(-1.7)
P 		191.8
(2.1)
P 		135.7
(-1.8)
P 		117.9
(-3)
P 		205.4
(3)
P 		88
B 137.8
(-2.8)
P 		169.1
(-0.6)
P 		135.1
(-3)
P 		143.4
(-2.4)
P 		174.2
(-0.2)
P 		218.4
(3)
P 		83
C 235.2
(3)
P 		141
(-1.4)
P 		134.5
(-1.7)
P 		105.6
(-3)
P 		178.3
(0.4)
P 		192.6
(1)
P 		130
avr 175.5
(0.7) 		148.9
(-1.4) 		153.8
(-1) 		128.2
(-3) 		156.8
(-0.8) 		205.5
(3) 		77
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 89.4
(3)
P 		56.8
(0)
P 		39.6
(-1.5)
P 		23.6
(-3)
P 		66
B 79.8
(3)
P 		50.7
(-0.3)
P 		45.1
(-0.9)
P 		26.9
(-3)
P 		53
C 74.9
(1.9)
P 		76.4
(2.1)
P 		85.3
(3)
P 		26.7
(-3)
P 		59
avr 81.4
(3) 		61.3
(0.8) 		56.7
(0.3) 		25.7
(-3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 28.3
(-3)
P 		48.5
(2.6)
P 		41.8
(0.7)
P 		34.4
(-1.3)
P 		35.6
(-1)
P 		50
(3)
P 		22
B 47.9
(-1.1)
P 		56.3
(-0.1)
P 		32.8
(-3)
P 		38
(-2.4)
P 		70.8
(1.7)
P 		81.5
(3)
P 		49
C 87.2
(3)
P 		43
(-1)
P 		34.2
(-1.8)
P 		21.2
(-3)
P 		57.7
(0.3)
P 		64.5
(0.9)
P 		66
avr 54.5
(1.1) 		49.3
(0.2) 		36.3
(-2.1) 		31.2
(-3) 		54.7
(1.1) 		65.3
(3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190324_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4028
Sequence Type Exemplar sequence
Representative Public ID E02H1.6 NCBI
Target Description E02H1.6 /REP_DB=WormBase Gene ID /WP=CE28286 /TR=SW:Q09527 /GB=CAA87383.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=ATP binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063664(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063664 NCBI Caenorhabditis elegans E02H1.6 (E02H1.6) mRNA, complete cds. 11/11 None
SNAP00000041924 ENSEMBL cdna:SNAP chromosome:CEL140:II:9596612:9597299:1 11/11 None
GENEFINDER00000041928 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9596612:9597299:1 11/11 None
E02H1.6 ENSEMBL cdna:known chromosome:CEL140:II:9596611:9597427:1 gene:E02H1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9596608-9597296(+) 100.0 100.0
Public Domain and Genome References
Gene Title ATP binding protein
Ensembl E02H1.6
Entrez Gene 174511 Entrez gene
SwissProt Q09527 EMBL-EBI
WormBase CE28286 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:247621_AT maoC-like dehydratase domain-containing protein at
CANINE:1586821_AT similar to TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor isoform 2 cfa
CANINE_2:CFA.6425.1.A1_AT similar to TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor isoform 2 cfa
CANINE_2:CFAAFFX.12468.1.S1_S_AT similar to TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor isoform 2 cfa
DROSOPHILA_2:1635356_AT dm
DROSGENOME1:147104_AT dm
CHICKEN:GGA.10705.1.S1_AT similar to UPF0101 protein CGI-137 (Protein AD-004) gga
CHICKEN:GGA.2077.1.S1_AT similar to UPF0101 protein CGI-137 (Protein AD-004) gga
YEAST_2:1778315_AT Essential nuclear protein, involved in the oxidative stress response Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8652 amino acid biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4765 shikimate kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA87383 Hypothetical protein E02H1.6 [Caenorhabditis elegans] ref|NP_496065.1| E02H1.6 [Caenorhabditis elegans] sp|Q09527|KAD6_CAEEL Probable adenylate kinase isoenzyme 6 (ATP-AMP transphosphorylase 6) 1.0E-102
blast CAE57907 Hypothetical protein CBG00957 [Caenorhabditis briggsae] 2.0E-88
blast CAA87383 Hypothetical protein E02H1.6 [Caenorhabditis elegans] ref|NP_496065.1| E02H1.6 [Caenorhabditis elegans] sp|Q09527|KAD6_CAEEL Probable adenylate kinase isoenzyme 6 (ATP-AMP transphosphorylase 6) 5.0E-86
blast CAE57907 Hypothetical protein CBG00957 [Caenorhabditis briggsae] 8.0E-72
blast T20418 hypothetical protein E02H1.6 - Caenorhabditis elegans 2.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 2.2E-9
Sequence
Target Sequence 
>C. ELEGANS:190324_AT
actcgtcgacgaccgaatatcctggtgactggatcacccggaactggaaaatcaacgctc
ggacaacaagttgctgagaagcttggatttgtatttattgaggtcagcaaagaagttcga
gaaaacaatttgcaaggagatttcgatgagcaatacaactgccacgttctcgacgaggat
aagcttttggatcacatttcagatcgtttggacagtgatgaagaatgcgagatttttgga
actctcttggaagaagccagagagtcgtatagtgaagacatcgtccatgaacttcaatca
gaaacaactgaacaaatggaggaaaacttggaaagaatctgcgaacttgccggagag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTCGTCGACGACCGAATATCCTGG 608 95 28 Antisense
TATCCTGGTGACTGGATCACCCGGA 680 655 45 Antisense
GAACTGGAAAATCAACGCTCGGACA 157 349 68 Antisense
AACGCTCGGACAACAAGTTGCTGAG 281 145 81 Antisense
TGAGCAATACAACTGCCACGTTCTC 219 569 174 Antisense
ACTGCCACGTTCTCGACGAGGATAA 161 97 185 Antisense
ATAAGCTTTTGGATCACATTTCAGA 476 25 206 Antisense
TCACATTTCAGATCGTTTGGACAGT 405 627 219 Antisense
TGGAACTCTCTTGGAAGAAGCCAGA 504 547 264 Antisense
AAGACATCGTCCATGAACTTCAATC 303 153 302 Antisense
AAGAATCTGCGAACTTGCCGGAGAG 157 153 360 Antisense
Sequence Source Affymetrix Proprietary Database