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[190321_at] zinc finger protein

Description C46E10.8 /REP_DB=WormBase Gene ID /WP=CE27861 /TR=O44719 /GB=AAB96685.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_total > 19      4grp_total > 37      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 89.1
(3)
A 		78
(0.6)
A 		64.4
(-2.3)
A 		61.3
(-3)
A 		28
B 79.4
(3)
A 		79.3
(3)
A 		63.5
(0)
A 		47.3
(-3)
A 		32
C 54.8
(0.5)
A 		48.5
(-0.3)
A 		26.4
(-3)
A 		75.7
(3)
A 		49
avr 74.4
(3) 		68.6
(1.5) 		51.4
(-3) 		61.4
(-0.4) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 56.6
(0.3)
A 		43.1
(-0.9)
A 		32.8
(-1.8)
A 		45.6
(-0.7)
A 		88
(3)
A 		19.4
(-3)
A 		69
B 51.4
(3)
A 		16.3
(-1.7)
A 		21.7
(-1)
A 		22.7
(-0.8)
A 		28.6
(-0)
A 		6.4
(-3)
A 		45
C 49.3
(0.7)
A 		69.4
(3)
A 		26.8
(-1.8)
A 		54.2
(1.3)
A 		52.6
(1.1)
A 		16.4
(-3)
A 		53
avr 52.4
(2.4) 		42.9
(1.1) 		27.1
(-1.2) 		40.8
(0.8) 		56.4
(3) 		14.1
(-3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 32.5
(3)
A 		16.9
(-1)
A 		16.8
(-1)
A 		9
(-3)
A 		24
B 25.3
(3)
A 		19.6
(0.8)
A 		14.7
(-1.2)
A 		10.1
(-3)
A 		15
C 18.1
(3)
A 		13.9
(0.2)
A 		9.2
(-3)
A 		12.8
(-0.6)
A 		9
avr 25.3
(3) 		16.8
(-0.5) 		13.6
(-1.8) 		10.6
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 10.4
(-1.4)
A 		15.3
(-0.1)
A 		7.2
(-2.3)
A 		11.6
(-1.1)
A 		26.5
(3)
A 		4.7
(-3)
A 		22
B 17.9
(3)
A 		5.4
(-1.8)
A 		5.3
(-1.9)
A 		6
(-1.6)
A 		11.6
(0.6)
A 		2.4
(-3)
A 		16
C 18.3
(1.9)
A 		21.2
(3)
A 		6.8
(-2.5)
A 		10.9
(-0.9)
A 		17
(1.4)
A 		5.5
(-3)
A 		16
avr 15.5
(1.8) 		14
(1.1) 		6.4
(-2.1) 		9.5
(-0.8) 		18.4
(3) 		4.2
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190321_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5626
Sequence Type Exemplar sequence
Representative Public ID C46E10.8 NCBI
Target Description C46E10.8 /REP_DB=WormBase Gene ID /WP=CE27861 /TR=O44719 /GB=AAB96685.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062231(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062231 NCBI Caenorhabditis elegans C46E10.8 (C46E10.8) mRNA, complete cds. 10/11 None
SNAP00000007038 ENSEMBL cdna:SNAP chromosome:CEL140:II:3726704:3727428:-1 10/11 None
GENEFINDER00000007043 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3725948:3727428:-1 10/11 None
C46E10.8 ENSEMBL cdna:known chromosome:CEL140:II:3725900:3727428:-1 gene:C46E10.8 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3725946-3727427(-) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Ensembl C46E10.8
Entrez Gene 173716 Entrez gene
SwissProt O44719 EMBL-EBI
WormBase CE27861 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB96685 Hypothetical protein C46E10.8 [Caenorhabditis elegans] ref|NP_494632.1| C46E10.8 [Caenorhabditis elegans] 1.0E-66
blast H88108 protein C46E10.8 [imported] - Caenorhabditis elegans 1.0E-63
blast AAB96685 Hypothetical protein C46E10.8 [Caenorhabditis elegans] ref|NP_494632.1| C46E10.8 [Caenorhabditis elegans] 2.0E-63
blast H88108 protein C46E10.8 [imported] - Caenorhabditis elegans 5.0E-63
blast AAB96685 Hypothetical protein C46E10.8 [Caenorhabditis elegans] ref|NP_494632.1| C46E10.8 [Caenorhabditis elegans] 8.0E-63
blast H88108 protein C46E10.8 [imported] - Caenorhabditis elegans 1.0E-62
blast AAK18925 Hypothetical protein F12E12.5 [Caenorhabditis elegans] ref|NP_494634.1| F12E12.5 [Caenorhabditis elegans] 4.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 5.7E-5
Sequence
Target Sequence 
>C. ELEGANS:190321_AT
caattttgctcagttgcttgacccagttcattctcaggagttgggcaagtttgtctacca
atgcaaagcgtgtagcagaatttacgcgagcaggaaatctctgaagtcccacctgaagag
ctacaaatatgctcgggaagtcgctggatacaaaagtaagcatacatgcgaaatctgcgg
agcccattactcaagtaaaatatacttgaaccgccatatgaaaaagcatctggaaactgc
tgattctggagctcatgcaattcccagtctgggctcacctgctccttcttcttcaggctt
tgcaactatgatcgttccaccagctccgttgctcagcgctatttcttctggatctccaca
gctcggggacacacgtgttctcgcctctttttcgtgcttcgcgccaatggaatgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATTTTGCTCAGTTGCTTGACCCA 203 181 42 Antisense
CTTGACCCAGTTCATTCTCAGGAGT 17 217 58 Antisense
CTGAAGTCCCACCTGAAGAGCTACA 659 237 142 Antisense
TATGCTCGGGAAGTCGCTGGATACA 445 657 169 Antisense
ATCTGCGGAGCCCATTACTCAAGTA 9 33 214 Antisense
GCTGATTCTGGAGCTCATGCAATTC 551 295 280 Antisense
TGCAATTCCCAGTCTGGGCTCACCT 623 575 297 Antisense
CTTCTTCTTCAGGCTTTGCAACTAT 527 221 326 Antisense
TTGCAACTATGATCGTTCCACCAGC 647 703 341 Antisense
TGCTCAGCGCTATTTCTTCTGGATC 79 581 371 Antisense
TCGTGCTTCGCGCCAATGGAATGCG 335 603 433 Antisense
Sequence Source Affymetrix Proprietary Database