[Home] | [Total List]

[190320_at] chitinase-like repeats

Description T19H5.1 /REP_DB=WormBase Gene ID /WP=CE01672 /TR=Q22598 /GB=CAA87665.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=chitinase-like repeats
Cluster 6grp_high1_10_10 > 71      4grp_high_8_8 > 33      6grp_total > 71      4grp_total > 46      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 241
1 2 3 4 range
A 230.7
(3)
P 		187
(1.2)
P 		104.6
(-2.3)
P 		88.7
(-3)
P 		142
B 223.2
(3)
P 		94.2
(-1.8)
P 		62
(-3)
A 		83.8
(-2.2)
A 		161
C 302.5
(3)
P 		100.2
(-3)
P 		108.2
(-2.8)
P 		134
(-2)
P 		202
avr 252.1
(3) 		127.1
(-1.7) 		91.6
(-3) 		102.2
(-2.6) 		161

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 351
1 2 3 4 5 6 range
A 78.3
(-2.5)
A 		172.1
(-0.6)
P 		253.9
(1)
P 		350.2
(3)
P 		232.1
(0.6)
P 		55.8
(-3)
A 		294
B 90.4
(-2.3)
P 		159.8
(-0.8)
P 		300.9
(2.3)
P 		334.5
(3)
P 		314
(2.6)
P 		60
(-3)
A 		275
C 72.5
(-3)
M 		161.5
(-1.4)
P 		302
(1.1)
P 		407.2
(3)
P 		302.9
(1.1)
P 		81.5
(-2.8)
P 		335
avr 80.4
(-2.7) 		164.5
(-1) 		285.6
(1.4) 		364
(3) 		283
(1.4) 		65.8
(-3) 		298
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 84
(3)
P 		40.6
(-0.7)
P 		27.4
(-1.8)
P 		13
(-3)
P 		71
B 71.2
(3)
P 		23.3
(-2.1)
P 		14.4
(-3)
A 		17.8
(-2.6)
A 		57
C 100.1
(3)
P 		28.8
(-2.5)
P 		37.7
(-1.8)
P 		22.6
(-3)
P 		78
avr 85.1
(3) 		30.9
(-1.8) 		26.5
(-2.2) 		17.8
(-3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 14.4
(-2.9)
A 		61.2
(0.8)
P 		55.3
(0.3)
P 		88.8
(3)
P 		70
(1.5)
P 		13.6
(-3)
A 		75
B 31.5
(-2.5)
P 		53.2
(-1.2)
P 		73.1
(-0.1)
P 		88.6
(0.8)
P 		127.6
(3)
P 		22.4
(-3)
A 		105
C 26.9
(-3)
M 		49.3
(-1.1)
P 		76.9
(1.2)
P 		81.9
(1.6)
P 		98
(3)
P 		27.3
(-3)
P 		71
avr 24.3
(-2.8) 		54.6
(-0.4) 		68.4
(0.7) 		86.4
(2.1) 		98.5
(3) 		21.1
(-3) 		77
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190320_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3076
Sequence Type Exemplar sequence
Representative Public ID T19H5.1 NCBI
Target Description T19H5.1 /REP_DB=WormBase Gene ID /WP=CE01672 /TR=Q22598 /GB=CAA87665.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=chitinase-like repeats
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063632(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063632 NCBI Caenorhabditis elegans T19H5.1 (T19H5.1) mRNA, complete cds. 11/11 None
GENEFINDER00000023261 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9469028:9469991:-1 11/11 None
T19H5.1 ENSEMBL cdna:known chromosome:CEL140:II:9469028:9473596:-1 gene:T19H5.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023252 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9469024-9473593(-) 100.0 100.0
Public Domain and Genome References
Gene Title chitinase-like repeats
Ensembl T19H5.1
Entrez Gene 188614 Entrez gene
SwissProt Q22598 EMBL-EBI
WormBase CE01672 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA87665 Hypothetical protein T19H5.1 [Caenorhabditis elegans] ref|NP_496033.1| T19H5.1 [Caenorhabditis elegans] 0.0
blast CAA87665 Hypothetical protein T19H5.1 [Caenorhabditis elegans] ref|NP_496033.1| T19H5.1 [Caenorhabditis elegans] 1.0E-125
blast CAA93870 Hypothetical protein R09D1.10 [Caenorhabditis elegans] ref|NP_496031.2| R09D1.10 [Caenorhabditis elegans] 4.0E-89
blast CAA93868 Hypothetical protein R09D1.8 [Caenorhabditis elegans] ref|NP_496029.1| R09D1.8 [Caenorhabditis elegans] 7.0E-82
blast CAA93874 Hypothetical protein R09D1.11 [Caenorhabditis elegans] emb|CAA87667.1| Hypothetical protein R09D1.11 [Caenorhabditis elegans] ref|NP_496032.1| R09D1.11 [Caenorhabditis elegans] 5.0E-58
blast CAA93870 Hypothetical protein R09D1.10 [Caenorhabditis elegans] ref|NP_496031.2| R09D1.10 [Caenorhabditis elegans] 3.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 2.1E-75
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 7.3E-63
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 2.6E-52
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 2.6E-52
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000023261 1 35-57
Sequence
Target Sequence 
>C. ELEGANS:190320_AT
gatgtttagtaatcaggcccaaagaaatcgatttttgaagttaaaagaactaacgaaaaa
tgaaaactctacagtgaagatgatgttttccattggtggtaaagataattcacaaaactt
ttcaccagtgacagcgagtccggatagaaaaaaatctttcataaatgctatacttgagtt
gcttgaaaagtatgacctagatggtgtcgatttattttggagatggccaaaatcagatga
caaggatgaatatgctgtatttcttcgagagttgaaaaaacagttgaaagccaggagaaa
ggattacattttgtcagtagttgtggcaccacttgatataaatagatgggattctaaatt
tgacattaagaaaataattaaacatgccgattttattagtatctatggattggcaaaaaa
tacgacagattcagaatcgccaatgtttgcttcagcttggggagcagcaagttcttcgat
gctcgaattaccagggatccagcaattaacttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGTTTAGTAATCAGGCCCAAAGA 85 397 1764 Antisense
TTCACCAGTGACAGCGAGTCCGGAT 581 685 1884 Antisense
AAATGCTATACTTGAGTTGCTTGAA 425 119 1926 Antisense
ACCTAGATGGTGTCGATTTATTTTG 466 87 1958 Antisense
AATATGCTGTATTTCTTCGAGAGTT 128 173 2012 Antisense
ATTTTGTCAGTAGTTGTGGCACCAC 78 15 2071 Antisense
GAATCGCCAATGTTTGCTTCAGCTT 336 329 2197 Antisense
GTTTGCTTCAGCTTGGGGAGCAGCA 545 451 2208 Antisense
GGGGAGCAGCAAGTTCTTCGATGCT 593 497 2222 Antisense
GATGCTCGAATTACCAGGGATCCAG 147 413 2241 Antisense
ACCAGGGATCCAGCAATTAACTTGT 301 39 2253 Antisense
Sequence Source Affymetrix Proprietary Database