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[190319_at] Zinc finger, C2H2 type

Description T22C8.4 /REP_DB=WormBase Gene ID /WP=CE02352 /TR=Q22677 /GB=CAA88876.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type
Cluster 6grp_total > 59      4grp_total > 19      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 190
1 2 3 4 range
A 98.4
(0.8)
A 		105.1
(3)
A 		86.7
(-3)
A 		89.8
(-2)
A 		18
B 77.1
(1)
A 		78.6
(1.1)
A 		26.2
(-3)
A 		103.3
(3)
A 		77
C 57.4
(-2.3)
A 		77.8
(-1.6)
A 		34.9
(-3)
A 		216.2
(3)
A 		181
avr 77.6
(-1.1) 		87.2
(-0.4) 		49.3
(-3) 		136.4
(3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 110.8
(0.2)
A 		93.6
(-0.7)
A 		102.3
(-0.3)
A 		51.9
(-3)
A 		111.2
(0.2)
A 		162.7
(3)
A 		111
B 116.9
(2.3)
A 		104.6
(1)
A 		69.4
(-3)
A 		78.5
(-2)
A 		94.9
(-0.1)
A 		122.7
(3)
A 		53
C 122.7
(1.8)
A 		56.4
(-3)
A 		82.4
(-1.1)
A 		99.6
(0.1)
A 		132
(2.5)
A 		139
(3)
A 		83
avr 116.8
(0.7) 		84.9
(-2.2) 		84.7
(-2.3) 		76.7
(-3) 		112.7
(0.3) 		141.5
(3) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 35.8
(3)
A 		22.8
(-0.4)
A 		22.7
(-0.5)
A 		13.1
(-3)
A 		23
B 24.6
(3)
A 		19.4
(1.3)
A 		6.1
(-3)
A 		22
(2.2)
A 		19
C 19
(-1.3)
A 		22.4
(-0.5)
A 		12.2
(-3)
A 		36.4
(3)
A 		24
avr 26.5
(3) 		21.5
(0.7) 		13.7
(-3) 		23.8
(1.7) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 20.4
(-1.4)
A 		33.3
(1.6)
A 		22.3
(-0.9)
A 		13.2
(-3)
A 		33.5
(1.6)
A 		39.6
(3)
A 		26
B 40.7
(1.9)
A 		34.8
(0.7)
A 		16.9
(-3)
A 		20.8
(-2.2)
A 		38.6
(1.5)
A 		45.8
(3)
A 		29
C 45.5
(2.8)
A 		17.2
(-3)
A 		21
(-2.2)
A 		20
(-2.4)
A 		42.7
(2.2)
A 		46.5
(3)
A 		29
avr 35.5
(1) 		28.4
(-0.6) 		20.1
(-2.5) 		18
(-3) 		38.3
(1.7) 		44
(3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190319_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2617
Sequence Type Exemplar sequence
Representative Public ID T22C8.4 NCBI
Target Description T22C8.4 /REP_DB=WormBase Gene ID /WP=CE02352 /TR=Q22677 /GB=CAA88876.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063431(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063431 NCBI Caenorhabditis elegans T22C8.4 (T22C8.4) mRNA, complete cds. 11/11 None
SNAP00000014910 ENSEMBL cdna:SNAP chromosome:CEL140:II:8622478:8623415:-1 10/11 None
GENEFINDER00000014921 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8622478:8623415:-1 10/11 None
T22C8.4 ENSEMBL cdna:known chromosome:CEL140:II:8622546:8623586:-1 gene:T22C8.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8622474-8623583(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C2H2 type
Ensembl T22C8.4
Entrez Gene 188732 Entrez gene
SwissProt Q22677 EMBL-EBI
WormBase CE36510 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88876 Hypothetical protein T22C8.4 [Caenorhabditis elegans] ref|NP_495832.2| T22C8.4 [Caenorhabditis elegans] 1.0E-136
blast CAA88876 Hypothetical protein T22C8.4 [Caenorhabditis elegans] ref|NP_495832.2| T22C8.4 [Caenorhabditis elegans] 3.0E-96
blast CAA88875 Hypothetical protein T22C8.3 [Caenorhabditis elegans] ref|NP_495831.1| T22C8.3 [Caenorhabditis elegans] 3.0E-29
blast CAA88875 Hypothetical protein T22C8.3 [Caenorhabditis elegans] ref|NP_495831.1| T22C8.3 [Caenorhabditis elegans] 1.0E-27
blast CAE73945 Hypothetical protein CBG21569 [Caenorhabditis briggsae] 2.0E-20
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495832.2 1 13-35
T22C8.4 1 13-35
Sequence
Target Sequence 
>C. ELEGANS:190319_AT
ggagctccaagcgaagacccgaaaattcgagctctccaatgtgatatctgctttgcatta
tttaaaaatgctgataagaaaaaacgccatgaccattctcataaagatgagccagaggta
tactgtccaatgtgcaatgctccaatcaagtataaatacaacttgaagcaacatatgaac
aaatgtcaaccgagccagaaagaaatggaacaaggcagtatgctcgccaaagcttacccg
gactacttacgtcaacttcaagaagctgcagttaatccgtctcttccaatgccaactttg
aatggaatgccatacagaatggatcgatattcatttgtcactggattcgatatgagtctt
gatgttcatttggatgtgatgctcccgaaatatcccacagacgtttttgtatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGCTCCAAGCGAAGACCCGAAAA 7 521 451 Antisense
TCGAGCTCTCCAATGTGATATCTGC 342 601 477 Antisense
AAAACGCCATGACCATTCTCATAAA 510 131 531 Antisense
ATACTGTCCAATGTGCAATGCTCCA 679 23 570 Antisense
GAACAAATGTCAACCGAGCCAGAAA 648 351 627 Antisense
AGGCAGTATGCTCGCCAAAGCTTAC 139 53 663 Antisense
CCGGACTACTTACGTCAACTTCAAG 428 261 688 Antisense
AGAAGCTGCAGTTAATCCGTCTCTT 97 75 711 Antisense
ATTCATTTGTCACTGGATTCGATAT 683 11 779 Antisense
TGTGATGCTCCCGAAATATCCCACA 121 557 825 Antisense
ATATCCCACAGACGTTTTTGTATGT 146 21 840 Antisense
Sequence Source Affymetrix Proprietary Database