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[190316_at] Human GS2 protein like

Description D1054.1 /REP_DB=WormBase Gene ID /WP=CE05520 /TR=Q18948 /GB=CAA98440.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Human GS2 protein like
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 63      4grp_highest_8_8 > 0      4grp_high_8_8 > 37      6grp_highest_nonorm > 53      6grp_total > 51      4grp_total > 43      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 385
1 2 3 4 range
A 479.9
(-1.4)
P 		668.9
(3)
P 		412.2
(-3)
P 		670.3
(3)
P 		258
B 513
(-2.4)
P 		797.6
(3)
P 		604
(-0.7)
P 		483.7
(-3)
P 		314
C 572.1
(-1.3)
P 		631.2
(3)
P 		589.4
(-0.1)
P 		549.2
(-3)
P 		82
avr 521.7
(-3) 		699.2
(3) 		535.2
(-2.5) 		567.7
(-1.4) 		178

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 823
1 2 3 4 5 6 range
A 676
(-1.5)
P 		685.5
(-1.5)
P 		1299.8
(3)
P 		1000.9
(0.8)
P 		476.4
(-3)
P 		637.8
(-1.8)
P 		823
B 678.2
(-1.6)
P 		687.4
(-1.5)
P 		995.4
(3)
P 		853.6
(1)
P 		580.3
(-3)
P 		590.4
(-2.9)
P 		415
C 537.5
(-2.5)
P 		771.6
(-0)
P 		1032.5
(2.7)
P 		1057.7
(3)
P 		491.7
(-3)
P 		621.3
(-1.6)
P 		566
avr 630.6
(-1.8) 		714.8
(-1) 		1109.2
(3) 		970.7
(1.6) 		516.1
(-3) 		616.5
(-2) 		593
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 174.7
(3)
P 		145.2
(0.7)
P 		107.8
(-2.2)
P 		98.1
(-3)
P 		77
B 163.6
(0.9)
P 		197
(3)
P 		140
(-0.6)
P 		103.1
(-3)
P 		94
C 189.4
(2.1)
P 		181.5
(1.7)
P 		205.4
(3)
P 		92.6
(-3)
P 		113
avr 175.9
(3) 		174.6
(2.9) 		151.1
(1.1) 		97.9
(-3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 124.6
(-3)
P 		243.8
(1.5)
P 		283.1
(3)
P 		253.8
(1.9)
P 		143.8
(-2.3)
P 		155.3
(-1.8)
P 		159
B 236
(1.4)
P 		228.8
(-0.6)
P 		241.7
(3)
P 		226.1
(-1.4)
P 		235.8
(1.4)
P 		220.2
(-3)
P 		22
C 199.2
(-0.7)
P 		235.4
(1.4)
P 		262.8
(3)
P 		212.7
(0.1)
P 		159.1
(-3)
P 		208
(-0.2)
P 		104
avr 186.6
(-2.5) 		236
(1.1) 		262.5
(3) 		230.9
(0.7) 		179.6
(-3) 		194.5
(-1.9) 		83
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190316_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13851
Sequence Type Exemplar sequence
Representative Public ID D1054.1 NCBI
Target Description D1054.1 /REP_DB=WormBase Gene ID /WP=CE05520 /TR=Q18948 /GB=CAA98440.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Human GS2 protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073348(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073348 NCBI Caenorhabditis elegans D1054.1 (D1054.1) mRNA, complete cds. 11/11 None
SNAP00000017212 ENSEMBL cdna:SNAP chromosome:CEL140:V:10771097:10772095:-1 10/11 None
GENEFINDER00000017234 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10770923:10772555:-1 11/11 None
D1054.1 ENSEMBL cdna:known chromosome:CEL140:V:10771097:10772510:-1 gene:D1054.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10771096-10772510(-) 98.51 100.0
Public Domain and Genome References
Gene Title Human GS2 protein like
Ensembl D1054.1
Entrez Gene 179492 Entrez gene
SwissProt Q18948 EMBL-EBI
WormBase CE35445 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.17602.1.S1_AT similar to GS2 gene cfa
CHICKEN:GGAAFFX.10640.1.S1_AT similar to GS2 gene gga
HG-U133A:209739_S_AT patatin-like phospholipase domain containing 4 hs
HG-U133A_2:209739_S_AT patatin-like phospholipase domain containing 4 hs
HG-U133_PLUS_2:209739_S_AT patatin-like phospholipase domain containing 4 hs
HU35KSUBD:RC_H93745_S_AT patatin-like phospholipase domain containing 4 hs
HUGENEFL:U03886_AT patatin-like phospholipase domain containing 4 hs
HG-U133A:209740_S_AT patatin-like phospholipase domain containing 4 hs
HG-U133_PLUS_2:209740_S_AT patatin-like phospholipase domain containing 4 hs
HG-U133A_2:209740_S_AT patatin-like phospholipase domain containing 4 hs
U133_X3P:G458225_3P_A_AT patatin-like phospholipase domain containing 4 hs
U133_X3P:HS.264.0.S1_3P_A_AT patatin-like phospholipase domain containing 4 hs
HG-U95AV2:35173_AT patatin-like phospholipase domain containing 4 hs
RG-U34C:RC_AA819901_AT similar to GS2 gene rn
RAE230A:1373344_AT similar to GS2 gene rn
RAT230_2:1373344_AT similar to GS2 gene rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
45735 nutrient reservoir activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98440 Hypothetical protein D1054.1 [Caenorhabditis elegans] ref|NP_505749.3| D1054.1 [Caenorhabditis elegans] 1.0E-151
blast CAA98440 Hypothetical protein D1054.1 [Caenorhabditis elegans] ref|NP_505749.3| D1054.1 [Caenorhabditis elegans] 1.0E-105
blast CAE64886 Hypothetical protein CBG09699 [Caenorhabditis briggsae] 9.0E-86
blast CAE64886 Hypothetical protein CBG09699 [Caenorhabditis briggsae] 2.0E-85
blast CAE64886 Hypothetical protein CBG09699 [Caenorhabditis briggsae] 3.0E-85
blast CAE69132 Hypothetical protein CBG15159 [Caenorhabditis briggsae] 9.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR002641 EMBL-EBI Patatin 3.5E-14
Pfam IPR002641 EMBL-EBI Patatin 3.5E-14
Sequence
Target Sequence 
>C. ELEGANS:190316_AT
ttgatgctgcaatcgacacactgtattcaatggcagatcacgttcatgctcaaagatttg
gtgccatgactcctggatattacttgaatgaacaactagttacaatcatagacgactttc
ttccgactgatattgcaaatgctcagggaagattgcatatttccataaccaaattgaaag
taagaacaaatacgcttgaaactctcataaaaattaaatgggaaaatataatgatcaaca
aatttgacagtcgtgatcatttgatatcatgccttcttgccagttgctacattccaatgt
attcaatgggatataaaggggttccaccaattattaatcaagaggaatgcatcgatggtg
gaatgaccaacaatttgcccacatttccagacgttttgacgataacatgctctccgtttt
ccagtcaagccgatatttgtccggatgatccttcaacctggaacattgaattcggtaaac
aaatattcaaggcgagtagacgaaatttgtatcgtggagctcgagcattgttcccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGATGCTGCAATCGACACACTGTA 244 705 206 Antisense
ATGGCAGATCACGTTCATGCTCAAA 279 53 235 Antisense
AGATTTGGTGCCATGACTCCTGGAT 586 65 259 Antisense
ATCATAGACGACTTTCTTCCGACTG 709 29 310 Antisense
TTTGATATCATGCCTTCTTGCCAGT 682 667 465 Antisense
TGACCAACAATTTGCCCACATTTCC 576 569 569 Antisense
CCCACATTTCCAGACGTTTTGACGA 518 257 583 Antisense
TGACGATAACATGCTCTCCGTTTTC 444 569 602 Antisense
AGCCGATATTTGTCCGGATGATCCT 216 83 633 Antisense
GGATGATCCTTCAACCTGGAACATT 471 513 648 Antisense
CGTGGAGCTCGAGCATTGTTCCCAC 185 245 718 Antisense
Sequence Source Affymetrix Proprietary Database