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[190314_at] Zinc finger, C2H2 type

Description F46B6.7 /REP_DB=WormBase Gene ID /WP=CE05873 /TR=Q20448 /GB=CAA94823.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 38      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_highest_nonorm > 37      6grp_total > 37      4grp_total > 04      6grp_highest_sub > Cu      6grp_cgc > 16      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14282
1 2 3 4 range
A 8646.3
(-1.2)
P 		4738.6
(-3)
P 		5143.9
(-2.8)
P 		17820.6
(3)
P 		13082
B 8282
(-1.4)
P 		5224.7
(-2.8)
P 		4858
(-3)
P 		17345.7
(3)
P 		12488
C 8182.7
(-1.6)
P 		5239.9
(-2.9)
P 		4965.6
(-3)
P 		19020.1
(3)
P 		14055
avr 8370.3
(-1.4) 		5067.7
(-3) 		4989.2
(-3) 		18062.1
(3) 		13073

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3811
1 2 3 4 5 6 range
A 6646
(2.3)
P 		6602
(2.2)
P 		3295.8
(-3)
P 		4453
(-1.2)
P 		4274.3
(-1.5)
P 		7106.3
(3)
P 		3811
B 5568.4
(3)
P 		5441.7
(2.6)
P 		3435.6
(-3)
P 		4149.8
(-1)
P 		4090
(-1.2)
P 		5045.4
(1.5)
P 		2133
C 6863.2
(3)
P 		5536.6
(0.3)
P 		5643
(0.5)
P 		3920
(-3)
P 		4812.8
(-1.2)
P 		5306.4
(-0.2)
P 		2943
avr 6359.2
(3) 		5860.1
(1.7) 		4124.8
(-3) 		4174.3
(-2.9) 		4392.4
(-2.3) 		5819.4
(1.6) 		2234
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2668
1 2 3 4 range
A 3148.1
(3)
P 		1028.6
(-3)
P 		1344.7
(-2.1)
P 		2608.6
(1.5)
P 		2120
B 2641.1
(0.5)
P 		1290.4
(-2.6)
P 		1125.7
(-3)
P 		3696.4
(3)
P 		2571
C 2708.7
(1.2)
P 		1506.5
(-3)
P 		1730.7
(-2.2)
P 		3207.1
(3)
P 		1701
avr 2832.6
(1.9) 		1275.2
(-3) 		1400.4
(-2.6) 		3170.7
(3) 		1896

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1826
1 2 3 4 5 6 range
A 1225.1
(-1.1)
P 		2348
(3)
P 		717.7
(-3)
P 		1129.4
(-1.5)
P 		1289.8
(-0.9)
P 		1730.2
(0.7)
P 		1630
B 1937.5
(3)
P 		1811.3
(2.3)
P 		834.3
(-3)
P 		1099.1
(-1.6)
P 		1661.7
(1.5)
P 		1881.4
(2.7)
P 		1103
C 2543.9
(3)
P 		1689.4
(0.1)
P 		1436.3
(-0.8)
P 		788.3
(-3)
P 		1557.3
(-0.4)
P 		1776.4
(0.4)
P 		1756
avr 1902.2
(2.7) 		1949.6
(3) 		996.1
(-3) 		1005.6
(-2.9) 		1502.9
(0.2) 		1796
(2) 		954
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190314_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11754
Sequence Type Exemplar sequence
Representative Public ID F46B6.7 NCBI
Target Description F46B6.7 /REP_DB=WormBase Gene ID /WP=CE05873 /TR=Q20448 /GB=CAA94823.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073125(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073125 NCBI Caenorhabditis elegans F46B6.7 (F46B6.7) mRNA, complete cds. 11/11 None
SNAP00000041199 ENSEMBL cdna:SNAP chromosome:CEL140:V:9790096:9792225:-1 11/11 None
GENEFINDER00000041206 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9790096:9792225:-1 11/11 None
F46B6.7.2 ENSEMBL cdna:known chromosome:CEL140:V:9789531:9792289:-1 gene:F46B6.7 11/11 None
F46B6.7.1 ENSEMBL cdna:known chromosome:CEL140:V:9789531:9792283:-1 gene:F46B6.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9790095-9792225(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C2H2 type
Gene Symbol ztf-7
Ensembl F46B6.7
Entrez Gene 179375 Entrez gene
SwissProt Q20448 EMBL-EBI
WormBase CE05873 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1597247_AT similar to zinc finger protein (C2H2 type) 277 cfa
CANINE_2:CFAAFFX.5895.1.S1_AT similar to zinc finger protein (C2H2 type) 277 cfa
DROSOPHILA_2:1630982_AT dm
DROSGENOME1:147737_AT dm
CHICKEN:GGA.9733.2.S1_A_AT zinc finger protein 277 gga
HG-U133_PLUS_2:215887_AT zinc finger protein 277 hs
HG-U133A_2:215887_AT zinc finger protein 277 hs
HG-U133A:215887_AT zinc finger protein 277 hs
HG-U133_PLUS_2:218645_AT zinc finger protein 277 hs
HG-U133A:218645_AT zinc finger protein 277 hs
HG-FOCUS:218645_AT zinc finger protein 277 hs
HG-U133A_2:218645_AT zinc finger protein 277 hs
HU35KSUBC:RC_W81219_AT zinc finger protein 277 hs
U133_X3P:G11496268_3P_AT zinc finger protein 277 hs
U133_X3P:HS2.42636.2.S1_3P_AT zinc finger protein 277 hs
U133_X3P:HS.288982.0.S1_3P_AT zinc finger protein 277 hs
HG-U133_PLUS_2:1555192_AT zinc finger protein 277 hs
HG-U133_PLUS_2:1555193_A_AT zinc finger protein 277 hs
HG-U95B:45206_AT zinc finger protein 277 hs
HG-U133_PLUS_2:236659_X_AT Zinc finger protein 277 hs
HG-U133B:236659_X_AT Zinc finger protein 277 hs
HG-U95B:52504_AT Zinc finger protein 277 hs
HG-U95C:58661_AT Zinc finger protein 277 hs
HU35KSUBB:RC_Z39734_AT Zinc finger protein 277 hs
HU35KSUBC:RC_AA234307_AT Zinc finger protein 277 hs
HU35KSUBD:RC_AA399666_AT Zinc finger protein 277 hs
U133_X3P:HS.22550.0.A1_3P_AT Zinc finger protein 277 hs
MOUSE430_2:1443362_AT zinc finger protein 277 mm
MOE430B:1443362_AT zinc finger protein 277 mm
MU11KSUBA:AA689125_G_AT zinc finger protein 277 mm
MU11KSUBA:AA689125_AT zinc finger protein 277 mm
MG-U74AV2:94937_AT zinc finger protein 277 mm
MG-U74AV2:161334_R_AT zinc finger protein 277 mm
MOE430A:1433953_AT zinc finger protein 277 mm
MOUSE430A_2:1433953_AT zinc finger protein 277 mm
MOUSE430_2:1433953_AT zinc finger protein 277 mm
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94823 Hypothetical protein F46B6.7 [Caenorhabditis elegans] ref|NP_505526.1| F46B6.7 [Caenorhabditis elegans] 0.0
blast CAE72255 Hypothetical protein CBG19374 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:190314_AT
aggacttcgaagataccatgcccacgttccaagattctgacgaagaagaggaagacaatg
agtggtgtgaatggcaggaagacaatctcgatgccgatgaaactcgcgttgtctgccttc
tctgtgatgctagcgaagacaacgctcaatcgctcctcgaacacatgaagactactcacg
aatttgatcttttgaagaatgttagcgatgacaagttgaacagttaccaacgtcttcgct
tgatcaattacattcgtaagcagaactatcatgcagattgctgggtttgtcagaagactg
agttcgaaaaccctctcgctcttcaaaagcatattctcgaacataagccattgagtcacc
ttccggatgcttcaatttgggataccgaggaaaatctagttccgatcttcggaaatgatc
acttcctgtggatgcttgaatcgatccttgaagaaaacgaaatcacttgcagcagcgacg
atgaaggagagagtgaggagcgtttctctaaactcgtccttgagagcaaaagtaatactg
ttgaaggagttatcgccgaagaccttcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGACTTCGAAGATACCATGCCCAC 241 55 1244 Antisense
TGCCCACGTTCCAAGATTCTGACGA 141 585 1262 Antisense
GCCGATGAAACTCGCGTTGTCTGCC 238 285 1336 Antisense
ATCGCTCCTCGAACACATGAAGACT 285 37 1392 Antisense
TTACCAACGTCTTCGCTTGATCAAT 274 681 1467 Antisense
AGACTGAGTTCGAAAACCCTCTCGC 214 71 1538 Antisense
ACATAAGCCATTGAGTCACCTTCCG 583 103 1584 Antisense
TCACCTTCCGGATGCTTCAATTTGG 282 611 1599 Antisense
AATGATCACTTCCTGTGGATGCTTG 165 165 1657 Antisense
AGGAGCGTTTCTCTAAACTCGTCCT 370 53 1739 Antisense
AGGAGTTATCGCCGAAGACCTTCCA 42 55 1788 Antisense
Sequence Source Affymetrix Proprietary Database