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[190313_at]

Description C02D4.2 /REP_DB=WormBase Gene ID /WP=CE28279 /TR=SW:O02213 /GB=CAB02718.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=octopamine receptor
Cluster 6grp_total > 15      4grp_total > 23      6grp_cgc > 32      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 134.7
(3)
P 		64
(-3)
P 		64.8
(-2.9)
A 		126
(2.3)
P 		71
B 79.6
(1.7)
P 		25.4
(-3)
A 		43.1
(-1.5)
A 		95.2
(3)
P 		70
C 150
(3)
P 		54.5
(-2.4)
M 		44.8
(-3)
A 		83.8
(-0.8)
M 		105
avr 121.4
(3) 		48
(-3) 		50.9
(-2.8) 		101.7
(1.4) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 109.1
(3)
P 		95.4
(2)
M 		71
(0.3)
A 		49.9
(-1.3)
A 		48.5
(-1.4)
A 		25.9
(-3)
A 		83
B 121.3
(3)
P 		109.5
(2.3)
P 		72.5
(0.2)
A 		49.8
(-1.1)
A 		71.4
(0.2)
M 		16.1
(-3)
A 		105
C 113.6
(2.2)
P 		125.8
(3)
P 		89.3
(0.5)
A 		54.4
(-1.9)
A 		43.4
(-2.7)
A 		38.9
(-3)
A 		87
avr 114.7
(3) 		110.2
(2.7) 		77.6
(0.5) 		51.4
(-1.3) 		54.4
(-1.1) 		27
(-3) 		88
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 49
(3)
P 		13.9
(-3)
P 		16.9
(-2.5)
A 		18.5
(-2.2)
P 		35
B 25.4
(3)
P 		6.3
(-3)
A 		10
(-1.8)
A 		20.3
(1.4)
P 		19
C 49.6
(3)
P 		15.7
(-2.7)
M 		15.6
(-2.7)
A 		14.1
(-3)
M 		36
avr 41.3
(3) 		12
(-3) 		14.2
(-2.5) 		17.6
(-1.9) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 20.1
(0)
P 		33.9
(3)
M 		15.5
(-1)
A 		12.7
(-1.6)
A 		14.6
(-1.2)
A 		6.3
(-3)
A 		28
B 42.2
(3)
P 		36.4
(2)
P 		17.6
(-1.1)
A 		13.2
(-1.8)
A 		29
(0.8)
M 		6
(-3)
A 		36
C 42.1
(3)
P 		38.4
(2.3)
P 		22.7
(-0.7)
A 		10.9
(-3)
A 		14
(-2.4)
A 		13
(-2.6)
A 		31
avr 34.8
(2.7) 		36.2
(3) 		18.6
(-0.8) 		12.3
(-2.2) 		19.2
(-0.7) 		8.4
(-3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190313_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17584
Sequence Type Exemplar sequence
Representative Public ID C02D4.2 NCBI
Target Description C02D4.2 /REP_DB=WormBase Gene ID /WP=CE28279 /TR=SW:O02213 /GB=CAB02718.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=octopamine receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029168(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029168 NCBI Caenorhabditis elegans SERotonin/octopamine receptor family member (ser-2) (ser-2) mRNA, complete cds. 9/11 None
GENEFINDER00000038273 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15286762:15291859:-1 10/11 None
C02D4.2e ENSEMBL cdna:known chromosome:CEL140:X:15286762:15294788:-1 gene:C02D4.2 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001029169 8/11 Cross Hyb Matching Probes None
NM_001029165 8/11 Cross Hyb Matching Probes None
NM_001029164 8/11 Cross Hyb Matching Probes None
SNAP00000038269 7/11 Cross Hyb Matching Probes None
SNAP00000038270 1/11 Cross Hyb Matching Probes None
C02D4.2f 8/11 Cross Hyb Matching Probes None
C02D4.2b 8/11 Cross Hyb Matching Probes None
C02D4.2a 8/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
182110 6 1 NM_001029168 190313_at (9)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15286761-15291859(-) 98.94 100.0
Public Domain and Genome References
Ensembl C02D4.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAF31467 Hypothetical protein C02D4.2e [Caenorhabditis elegans] ref|NP_001024339.1| SERotonin/octopamine receptor family member (ser-2) [Caenorhabditis elegans] sp|O02213|SER2_CAEEL Tyramine receptor 0.0
blast AAN16458 tyramine receptor long isoform SER-2 [Caenorhabditis elegans] 0.0
blast T18863 hypothetical protein C02D4.2 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 1.7E-101
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 4.3E-86
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 1.7E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024339.1 7 61-83,95-117,132-154,174-196,216-238,372-391,406-428
C02D4.2e 7 61-83,95-117,132-154,174-196,216-238,372-391,406-428
GENEFINDER00000038273 7 13-35,50-72,84-106,121-143,163-185,205-227,361-380
Sequence
Target Sequence 
>C. ELEGANS:190313_AT
caaacgactgtaactactcttgccgctcattctaccgacggcggtagcttgccaaaagat
gaaaccacgaagcacatgaaatatcacaataatggatcgtgcaaagtgaaagtgaaggat
gtgaaggaggatgaaggaaatccaaatcctactgcagtcctgcgaaaacgtgagaaaatc
agtgtggcgaaggagaaaagagcagcaaaaactattgctgttattatattcgtattttca
ttctgttggctaccattttttgtagcatatgtcatacgaccattttgtgaaacatgtaaa
cttcatgcaaaagctactccacctttaacaatatattatcgacaaaataagcacgcaatt
tttttcatcagatttattttcggtcttcatgatagactgaacctttcgagaaaacaatgg
atgagaactctagtccaacaggttgaacaggctttcacgtggcttggctatatcaactct
tcacttaacccattcctttacggtattctaaatttggagtttcgccgagcattcaagaag
attctgtgccctaaagctgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAACGACTGTAACTACTCTTGCCG 14 191 919 Antisense
CCGACGGCGGTAGCTTGCCAAAAGA 676 261 953 Antisense
GGAAATCCAAATCCTACTGCAGTCC 432 527 1054 Antisense
ACTGCAGTCCTGCGAAAACGTGAGA 552 97 1069 Antisense
ATTTTCATTCTGTTGGCTACCATTT 210 15 1152 Antisense
ACTTCATGCAAAAGCTACTCCACCT 480 103 1218 Antisense
GAGAACTCTAGTCCAACAGGTTGAA 601 391 1341 Antisense
GCTTTCACGTGGCTTGGCTATATCA 280 305 1369 Antisense
GGCTATATCAACTCTTCACTTAACC 220 537 1384 Antisense
ATTTGGAGTTTCGCCGAGCATTCAA 381 17 1430 Antisense
GAAGATTCTGTGCCCTAAAGCTGTA 660 337 1455 Antisense
Sequence Source Affymetrix Proprietary Database