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[190312_at] D-amino acid oxidase

Description F20H11.5 /REP_DB=WormBase Gene ID /WP=CE09514 /TR=O01739 /GB=AAB53982.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=D-amino acid oxidase
Cluster 6grp_total > 99      4grp_total > 33      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 73.5
(-3)
A 		88.8
(-1.7)
A 		145.7
(3)
P 		143.9
(2.9)
P 		72
B 76.4
(-3)
A 		150.2
(2.2)
A 		162.2
(3)
P 		106.2
(-0.9)
A 		86
C 64.3
(-3)
A 		137.6
(0.6)
A 		108.6
(-0.8)
A 		187.3
(3)
A 		123
avr 71.4
(-3) 		125.5
(1.4) 		138.8
(2.4) 		145.8
(3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1085
1 2 3 4 5 6 range
A 86.6
(-2.9)
A 		62.3
(-3)
A 		109.4
(-2.7)
A 		130.4
(-2.6)
P 		1147.6
(3)
P 		872.4
(1.5)
P 		1085
B 85.6
(-3)
A 		113.1
(-2.8)
A 		110
(-2.9)
A 		120.8
(-2.8)
P 		1095.5
(3)
P 		828.7
(1.4)
P 		1010
C 76.7
(-3)
A 		119.9
(-2.7)
A 		132.7
(-2.6)
A 		154.2
(-2.5)
P 		983.9
(3)
P 		897
(2.4)
P 		907
avr 83
(-3) 		98.4
(-2.9) 		117.4
(-2.8) 		135.1
(-2.7) 		1075.7
(3) 		866
(1.7) 		993
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 26.7
(-0.6)
A 		19.3
(-3)
A 		38.1
(3)
P 		21.1
(-2.4)
P 		19
B 24.4
(-2.3)
A 		37.1
(2.8)
A 		37.6
(3)
P 		22.6
(-3)
A 		15
C 21.3
(-3)
A 		39.6
(3)
A 		37.9
(2.4)
A 		31.6
(0.4)
A 		18
avr 24.1
(-3) 		32
(0.4) 		37.9
(3) 		25.1
(-2.6) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 429
1 2 3 4 5 6 range
A 16
(-3)
A 		22.2
(-2.9)
A 		23.8
(-2.9)
A 		33.1
(-2.7)
P 		346.3
(3)
P 		212.4
(0.6)
P 		330
B 29.8
(-3)
A 		37.6
(-2.8)
A 		26.7
(-3)
A 		32
(-2.9)
P 		445.1
(3)
P 		309
(1)
P 		418
C 28.4
(-3)
A 		36.6
(-2.8)
A 		33.8
(-2.9)
A 		31
(-2.9)
P 		318.4
(3)
P 		300.3
(2.6)
P 		290
avr 24.7
(-3) 		32.1
(-2.9) 		28.1
(-2.9) 		32
(-2.9) 		369.9
(3) 		273.9
(1.3) 		345
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190312_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7008
Sequence Type Exemplar sequence
Representative Public ID F20H11.5 NCBI
Target Description F20H11.5 /REP_DB=WormBase Gene ID /WP=CE09514 /TR=O01739 /GB=AAB53982.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=D-amino acid oxidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066052(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066052 NCBI Caenorhabditis elegans F20H11.5 (F20H11.5) mRNA, complete cds. 11/11 None
SNAP00000039386 ENSEMBL cdna:SNAP chromosome:CEL140:III:6587832:6589208:1 11/11 None
GENEFINDER00000039392 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6587832:6589208:1 11/11 None
F20H11.5 ENSEMBL cdna:known chromosome:CEL140:III:6587832:6589208:1 gene:F20H11.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6587830-6589207(+) 100.0 100.0
Public Domain and Genome References
Gene Title D-amino acid oxidase
Ensembl F20H11.5
Entrez Gene 184746 Entrez gene
SwissProt O01739 EMBL-EBI
WormBase CE09514 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3884 D-amino-acid oxidase activity inferred from electronic annotation QuickGO AmiGO
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB53982 Hypothetical protein F20H11.5 [Caenorhabditis elegans] ref|NP_498453.1| F20H11.5 [Caenorhabditis elegans] 0.0
blast CAE72522 Hypothetical protein CBG19702 [Caenorhabditis briggsae] 1.0E-178
blast CAB03970 Hypothetical protein C47A10.5 [Caenorhabditis elegans] ref|NP_507491.2| C47A10.5 [Caenorhabditis elegans] 7.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR006076 EMBL-EBI FAD dependent oxidoreductase 6.2E-114
Sequence
Target Sequence 
>C. ELEGANS:190312_AT
aattcagctggacttcttggtggagttctagcaggtgatgatgcagggaacatgaagcca
attcgtggagtgctcatccgagttgatgcaccatggcagaaacatttcctctacagagac
ttttctacaattacaattccggttatcgaccatgtctacatgggaactgtgaaacaagaa
ggagcatttgggccaaacaatgtgacatctgcagatatccaggatatcactagccgttat
gtggcattgcaaccatctttcaagcgtgttcacatgctttcatcattcgttggatatcgt
ccaggtcgcaagcaagttcgtgtcgagaagcagattcgagagaccaacggatccaagaag
tttacggtcgtccataactacggtcatagtggaaacggattcacacttggatacggtagt
gcagttcatgccgcccatatcgttctcgatttgccactggatgcttatcacggacttgtc
ccagaacctcttcccattaatgcaacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCAGCTGGACTTCTTGGTGGAG 55 177 625 Antisense
AATTCCGGTTATCGACCATGTCTAC 448 177 759 Antisense
GTGGCATTGCAACCATCTTTCAAGC 317 491 865 Antisense
GTGTTCACATGCTTTCATCATTCGT 630 485 890 Antisense
GATATCGTCCAGGTCGCAAGCAAGT 314 425 917 Antisense
TACGGTCGTCCATAACTACGGTCAT 606 619 987 Antisense
TACGGTAGTGCAGTTCATGCCGCCC 362 647 1036 Antisense
CCCATATCGTTCTCGATTTGCCACT 330 259 1058 Antisense
TTGCCACTGGATGCTTATCACGGAC 648 701 1075 Antisense
TATCACGGACTTGTCCCAGAACCTC 431 649 1090 Antisense
GAACCTCTTCCCATTAATGCAACGA 637 343 1108 Antisense
Sequence Source Affymetrix Proprietary Database