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[190311_s_at] alcohol dehydrogenase

Description C45B11.3 /REP_DB=WormBase Gene ID /WP=CE05427 /TR=Q18639 /GB=CAA98431.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=alcohol dehydrogenase
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 37      4grp_highest_8_8 > 20      4grp_high_8_8 > 31      6grp_highest_nonorm > 03      6grp_total > 07      4grp_total > 24      6grp_highest_sub > Cu      6grp_cgc > 11      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3165
1 2 3 4 range
A 3324
(-2.8)
P 		3261.3
(-3)
P 		5158.2
(3)
P 		4963.5
(2.4)
P 		1897
B 2964.2
(-3)
P 		3788.6
(-1.4)
P 		5362.3
(1.5)
P 		6129.2
(3)
P 		3165
C 3504.9
(-3)
P 		3843
(-2.1)
P 		5413
(2.3)
P 		5659.6
(3)
P 		2155
avr 3264.4
(-3) 		3631
(-2.1) 		5311.2
(2.3) 		5584.1
(3) 		2320

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2933
1 2 3 4 5 6 range
A 4905.3
(3)
P 		2602.3
(-1.7)
P 		3345.3
(-0.2)
P 		2892.3
(-1.1)
P 		1972.7
(-3)
P 		2976.5
(-0.9)
P 		2933
B 4652.1
(3)
P 		2863.4
(-1.1)
P 		2886.9
(-1.1)
P 		2674.3
(-1.6)
P 		2053.3
(-3)
P 		2655.2
(-1.6)
P 		2599
C 3976.6
(3)
P 		2699.6
(-0.8)
P 		2823.5
(-0.5)
P 		3007.9
(0.1)
P 		1984.1
(-3)
P 		2897.1
(-0.3)
P 		1993
avr 4511.3
(3) 		2721.8
(-1.3) 		3018.6
(-0.6) 		2858.2
(-1) 		2003.4
(-3) 		2842.9
(-1) 		2508
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1179
1 2 3 4 range
A 1210.3
(1.7)
P 		707.9
(-3)
P 		1348.5
(3)
P 		726.6
(-2.8)
P 		641
B 945.3
(-2.8)
P 		935.7
(-3)
P 		1242.6
(2)
P 		1306.1
(3)
P 		370
C 1160.2
(-1.7)
P 		1104.9
(-2)
P 		1886.6
(3)
P 		954.3
(-3)
P 		932
avr 1105.3
(-1) 		916.2
(-3) 		1492.6
(3) 		995.7
(-2.2) 		576

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1023
1 2 3 4 5 6 range
A 904.2
(2.6)
P 		925.5
(3)
P 		728.5
(-0.6)
P 		733.5
(-0.5)
P 		595.3
(-3)
P 		724.7
(-0.6)
P 		330
B 1618.7
(3)
P 		953.1
(-1.4)
P 		701
(-3)
P 		708.3
(-3)
P 		834.2
(-2.1)
P 		990.1
(-1.1)
P 		918
C 1474
(3)
P 		823.7
(-1.5)
P 		718.6
(-2.2)
P 		604.9
(-3)
P 		642
(-2.7)
P 		969.8
(-0.5)
P 		869
avr 1332.3
(3) 		900.8
(-1) 		716
(-2.7) 		682.2
(-3) 		690.5
(-2.9) 		894.9
(-1) 		650
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190311_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12978
Sequence Type Exemplar sequence
Representative Public ID C45B11.3 NCBI
Target Description C45B11.3 /REP_DB=WormBase Gene ID /WP=CE05427 /TR=Q18639 /GB=CAA98431.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=alcohol dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073411(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073411 NCBI Caenorhabditis elegans DeHydrogenases, Short chain family member (dhs-18) (dhs-18) mRNA, complete cds. 11/11 None
SNAP00000011921 ENSEMBL cdna:SNAP chromosome:CEL140:V:11048338:11049407:-1 11/11 None
GENEFINDER00000011926 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11048338:11050691:-1 11/11 None
C45B11.3.1 ENSEMBL cdna:known chromosome:CEL140:V:11048302:11049421:-1 gene:C45B11.3 11/11 None
C45B11.3.2 ENSEMBL cdna:known chromosome:CEL140:V:11048338:11049435:-1 gene:C45B11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11048337-11049407(-) 100.0 100.0
Public Domain and Genome References
Gene Title alcohol dehydrogenase
Gene Symbol dhs-18
Ensembl C45B11.3
Entrez Gene 179529 Entrez gene
SwissProt Q18639 EMBL-EBI
WormBase CE05427 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98431 Hypothetical protein C45B11.3 [Caenorhabditis elegans] ref|NP_505812.1| DeHydrogenases, Short chain family member (dhs-18) [Caenorhabditis elegans] 1.0E-155
blast CAE75163 Hypothetical protein CBG23100 [Caenorhabditis briggsae] 1.0E-141
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 6.2E-36
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 8.0E-110
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 6.2E-36
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000011926 5 7-29,39-59,80-102,141-163,184-206
Sequence
Target Sequence 
>C. ELEGANS:190311_S_AT
aataatgcttcagccatctctcttaccaacacagaagatacagacatgaaacgatacgat
ctgatgcactcaatcaatacacgtggaacctacctactcacaaaaacttgtctcccttat
ttgaagaaaggaaaaaatccacatgtgttgaatatttcgccgcctcttgatatggaagca
aaatggtttggacctcatgttgggtatactatggcaaaattcggaatgtcaatgtgtgta
cttggacatcatgaagaattccgtccatatggaattgcagtgaacgctttatggccgtta
actgcaatttggacatctgcaatggagtttttatctcatggaggagattctgcaggaaac
agaaaagcatcaattatggctgattctgcatacgctattctatcaaaagactcgaaaaag
ttcaccggcaatttcctaattgatgaagaactactacaaacacaagggatcaccaatttt
gagcaatacgaatgtgttccaggatcctcacttattccagacttttttgtccctgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATAATGCTTCAGCCATCTCTCTTA 484 171 319 Antisense
GAAACGATACGATCTGATGCACTCA 601 357 366 Antisense
TGGAACCTACCTACTCACAAAAACT 406 543 402 Antisense
CATGTGTTGAATATTTCGCCGCCTC 196 209 460 Antisense
GGTTTGGACCTCATGTTGGGTATAC 520 505 503 Antisense
GAATTGCAGTGAACGCTTTATGGCC 71 325 590 Antisense
ATGGCCGTTAACTGCAATTTGGACA 630 49 609 Antisense
GATTCTGCATACGCTATTCTATCAA 577 431 700 Antisense
AAGTTCACCGGCAATTTCCTAATTG 181 157 736 Antisense
TCCAGGATCCTCACTTATTCCAGAC 454 589 816 Antisense
TATTCCAGACTTTTTTGTCCCTGAA 151 665 831 Antisense
Sequence Source Affymetrix Proprietary Database