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[190309_at] transcription factor

Description F18A1.2 /REP_DB=WormBase Gene ID /WP=CE27972 /GEN=lin-26 /GB=AAK67251.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=transcription factor
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 08      4grp_highest_8_8 > 08      4grp_high_8_8 > 52      6grp_highest_nonorm > 30      6grp_total > 19      4grp_total > 51      6grp_highest_sub > Cu      6grp_cgc > 01      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1160
1 2 3 4 range
A 1157.6
(0.3)
P 		1663.1
(3)
P 		1246.3
(0.8)
P 		550.8
(-3)
P 		1112
B 1066.4
(0.4)
P 		1455
(3)
P 		1426.5
(2.8)
P 		554.8
(-3)
P 		900
C 1181.7
(0.9)
P 		1541.1
(3)
P 		1469
(2.6)
P 		503
(-3)
P 		1038
avr 1135.2
(0.5) 		1553.1
(3) 		1380.6
(2) 		536.2
(-3) 		1017

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1116
1 2 3 4 5 6 range
A 1313.5
(3)
P 		979.3
(0.6)
P 		493
(-3)
P 		846.1
(-0.4)
P 		931.2
(0.2)
P 		829.3
(-0.5)
P 		821
B 1212.9
(3)
P 		571
(-2.9)
P 		554.6
(-3)
P 		778.7
(-1)
P 		798.3
(-0.8)
P 		613.4
(-2.5)
P 		658
C 1609.1
(3)
P 		624.1
(-3)
P 		877.2
(-1.5)
P 		639.3
(-2.9)
P 		1147.9
(0.2)
P 		688
(-2.6)
P 		985
avr 1378.5
(3) 		724.8
(-2.3) 		641.6
(-3) 		754.7
(-2.1) 		959.1
(-0.4) 		710.2
(-2.4) 		737
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 431
1 2 3 4 range
A 421.5
(3)
P 		361
(1.9)
P 		325.8
(1.3)
P 		80.6
(-3)
P 		341
B 340.1
(2.5)
P 		359.4
(3)
P 		330.6
(2.3)
P 		118.2
(-3)
P 		241
C 391.2
(1.3)
P 		443.1
(2)
P 		512
(3)
P 		84.8
(-3)
P 		427
avr 384.3
(2.9) 		387.8
(3) 		389.5
(3) 		94.5
(-3) 		295

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 489
1 2 3 4 5 6 range
A 242.1
(0.4)
P 		348.3
(3)
P 		107.4
(-3)
P 		214.6
(-0.3)
P 		281
(1.3)
P 		201.9
(-0.6)
P 		241
B 422
(3)
P 		190.1
(-1.8)
P 		134.7
(-3)
P 		206.3
(-1.5)
P 		324.3
(1)
P 		228.7
(-1)
P 		287
C 596.4
(3)
P 		190.4
(-2.2)
P 		223.3
(-1.8)
P 		128.6
(-3)
P 		371.4
(0.1)
P 		230.3
(-1.7)
P 		468
avr 420.2
(3) 		242.9
(-1) 		155.1
(-3) 		183.2
(-2.4) 		325.6
(0.9) 		220.3
(-1.5) 		265
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190309_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5454
Sequence Type Exemplar sequence
Representative Public ID F18A1.2 NCBI
Target Description F18A1.2 /REP_DB=WormBase Gene ID /WP=CE27972 /GEN=lin-26 /GB=AAK67251.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=transcription factor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026921(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026921 NCBI Caenorhabditis elegans abnormal cell LINeage family member (lin-26) (lin-26) mRNA, complete cds. 11/11 None
SNAP00000013716 ENSEMBL cdna:SNAP chromosome:CEL140:II:7682392:7684099:1 11/11 None
GENEFINDER00000013723 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7682392:7684372:1 11/11 None
F18A1.2.3 ENSEMBL cdna:known chromosome:CEL140:II:7681882:7684677:1 gene:F18A1.2 11/11 None
F18A1.2.2 ENSEMBL cdna:known chromosome:CEL140:II:7682388:7684674:1 gene:F18A1.2 11/11 A 
F18A1.2.1 ENSEMBL cdna:known chromosome:CEL140:II:7682392:7684680:1 gene:F18A1.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7682111-7684096(+) 100.0 100.0
Public Domain and Genome References
Gene Title transcription factor
Gene Symbol lin-26
Ensembl F18A1.2
Entrez Gene 3565051 Entrez gene
SwissProt Q27355 EMBL-EBI
WormBase CE27972 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
5634 nucleus inferred from direct assay QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from sequence similarity QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK67251 Abnormal cell lineage protein 26 [Caenorhabditis elegans] ref|NP_001022092.1| abnormal cell LINeage family member (lin-26) [Caenorhabditis elegans] sp|Q27355|LIN26_CAEEL Transcription factor lin-26 (Abnormal cell lineage protein 26) emb|CAA10262.1| LIN-26B [Caenorhabditis elegans] 0.0
blast CAA83585 transcription factor [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:190309_AT
aacgacgcctgcatcaaaacgacgaaacactgattcaaatggtgctccatcgaaaaaaca
tcgttggctcccagtcaatgagcttgaagagagtcgatcatcgcgaggaaagaactgcgg
aagagttcattgcaaggccacctacaagtgtgcactctgtggaaagccaacaacactcaa
ctcaacaggatctcgttggaatcttctgcgccacgtcatcatgatccattcggattgtaa
gccatataagtgttgggattgtgacttcaccggaataaaatccaacgttatctcccacgc
caggcaatgtcgtcacaacgccgaagatgcccatgacattactaccgacgagatgcgtgc
cgaatggaatctccgccttcacgaatgcttcccagattatgtgcgtgctaaagaacgtgg
atggcaaccagaggaggttactgtaaagaaagaagaagtagaggagtctccaactcttgt
caaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGACGCCTGCATCAAAACGACGA 272 141 873 Antisense
GGAAGAGTTCATTGCAAGGCCACCT 511 529 991 Antisense
AAGGCCACCTACAAGTGTGCACTCT 425 161 1006 Antisense
AACACTCAACTCAACAGGATCTCGT 567 135 1044 Antisense
CACGTCATCATGATCCATTCGGATT 659 199 1084 Antisense
TAAAATCCAACGTTATCTCCCACGC 88 641 1148 Antisense
CGCCAGGCAATGTCGTCACAACGCC 610 255 1170 Antisense
GAAGATGCCCATGACATTACTACCG 164 339 1195 Antisense
ATGCGTGCCGAATGGAATCTCCGCC 33 41 1225 Antisense
ATGCTTCCCAGATTATGTGCGTGCT 259 41 1257 Antisense
AGAGGAGTCTCCAACTCTTGTCAAA 259 69 1332 Antisense
Sequence Source Affymetrix Proprietary Database