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[190306_s_at] Hint module

Description C29F3.2 /REP_DB=WormBase Gene ID /WP=CE15644 /GEN=wrt-8 /TR=O45273 /GB=CAA19424.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Hint module
Cluster 6grp_total > 0      4grp_total > 49      6grp_total_sub > Hat      6grp_cgc > 53      6grp_cgc_sub > 02      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 226
1 2 3 4 range
A 47.3
(-1.9)
A 		159.7
(1.7)
P 		201.2
(3)
P 		13.5
(-3)
A 		188
B 9
(-3)
A 		188.6
(3)
P 		157.8
(2)
P 		54.5
(-1.5)
A 		180
C 37.2
(-2.9)
A 		181.6
(1.4)
P 		235
(3)
P 		32.7
(-3)
A 		202
avr 31.2
(-3) 		176.6
(2.2) 		198
(3) 		33.6
(-2.9) 		167

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 24.2
(-3)
A 		168
(3)
P 		56.2
(-1.7)
A 		74.8
(-0.9)
A 		37.4
(-2.4)
A 		89.3
(-0.3)
A 		144
B 55.9
(-2.6)
A 		167.6
(3)
P 		88.3
(-1)
A 		71.4
(-1.8)
A 		85.5
(-1.1)
A 		47.9
(-3)
A 		120
C 28.6
(-3)
A 		185.4
(3)
P 		37.2
(-2.7)
A 		47.9
(-2.3)
A 		61.3
(-1.7)
A 		56.1
(-1.9)
A 		157
avr 36.2
(-3) 		173.7
(3) 		60.6
(-1.9) 		64.7
(-1.8) 		61.4
(-1.9) 		64.4
(-1.8) 		138
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 17.2
(-1.2)
A 		34.7
(0.9)
P 		52.6
(3)
P 		2
(-3)
A 		51
B 2.9
(-3)
A 		46.6
(3)
P 		36.6
(1.6)
P 		11.6
(-1.8)
A 		44
C 12.3
(-2.5)
A 		52.2
(0.7)
P 		81.9
(3)
P 		5.5
(-3)
A 		76
avr 10.8
(-2.5) 		44.5
(1.5) 		57
(3) 		6.4
(-3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 4.5
(-3)
A 		59.8
(3)
P 		12.2
(-2.2)
A 		19
(-1.4)
A 		11.3
(-2.3)
A 		21.8
(-1.1)
A 		55
B 19.4
(-2.8)
A 		55.8
(3)
P 		21.5
(-2.4)
A 		18.9
(-2.8)
A 		34.7
(-0.3)
A 		17.9
(-3)
A 		38
C 10.6
(-2.9)
A 		56.6
(3)
P 		9.5
(-3)
A 		9.6
(-3)
A 		19.8
(-1.7)
A 		18.8
(-1.8)
A 		47
avr 11.5
(-3) 		57.4
(3) 		14.4
(-2.6) 		15.8
(-2.4) 		21.9
(-1.6) 		19.5
(-2) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190306_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14019
Sequence Type Exemplar sequence
Representative Public ID C29F3.2 NCBI
Target Description C29F3.2 /REP_DB=WormBase Gene ID /WP=CE15644 /GEN=wrt-8 /TR=O45273 /GB=CAA19424.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Hint module
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074404(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074404 NCBI Caenorhabditis elegans WaRThog (hedgehog-like family) family member (wrt-8) (wrt-8) mRNA, complete cds. 11/11 None
C29F3.2 ENSEMBL cdna:known chromosome:CEL140:V:15344648:15347162:-1 gene:C29F3.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013688 6/11 Cross Hyb Matching Probes None
GENEFINDER00000013694 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15344734-15347743(-) 99.95 100.0
Public Domain and Genome References
Gene Title Hint module
Gene Symbol wrt-8
Ensembl C29F3.2
Entrez Gene 180035 Entrez gene
SwissProt Q94130 EMBL-EBI
WormBase CE29200 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
7154 cell communication inferred from electronic annotation QuickGO AmiGO
7275 development inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8233 peptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02804 Hypothetical protein C29F3.2 [Caenorhabditis elegans] emb|CAA19424.2| Hypothetical protein C29F3.2 [Caenorhabditis elegans] ref|NP_506805.1| WaRThog (hedgehog-like family) family member (wrt-8) [Caenorhabditis elegans] sp|Q94130|WRT8_CAEEL Warthog protein 8 precursor (M89 protein) [Contains: Warthog protein 8 N-product; Warthog protein 8 C-product] 0.0
blast T19563 hypothetical protein C29F3.2 - Caenorhabditis elegans 0.0
blast AAB17542 M89 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001767 EMBL-EBI Peptidase C46, hedgehog protein, hint region 3.7E-104
Sequence
Target Sequence 
>C. ELEGANS:190306_S_AT
cttccctgccgatgcggaggtgaacgtctacgaaaaaggagtgaagcggatggatgagct
agaagttggagattgggttcaggcattacacgggaaggaaactacatattcgccagttaa
atattggcttcatagagatccggagcaagaagctgaatttgttgaattcctactcgaaaa
tggagaatctttcactctcaccgagaagcatctggttttcgccacagattgccagcaaaa
tgtcaaaaatctcgatgacctgaacccaacttctacgggaaaaataaacattggagaatg
tttctttatggctcaaccagagaacgcttcgaaattccaaaaagttcaaattcttgacat
ccaacgtgtgcggaaaactggaatttatgccccaatgacttctctcgggcatcttcttgt
caaccaaattcacacgtcttgccactcggaaattgatcaccatcttctacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCCCTGCCGATGCGGAGGTGAAC 691 217 1275 Antisense
GATTGGGTTCAGGCATTACACGGGA 509 433 1345 Antisense
GAATCTTTCACTCTCACCGAGAAGC 282 327 1459 Antisense
TTTTCGCCACAGATTGCCAGCAAAA 182 677 1490 Antisense
TGACCTGAACCCAACTTCTACGGGA 511 383 1530 Antisense
GAATGTTTCTTTATGGCTCAACCAG 14 331 1570 Antisense
AATTCTTGACATCCAACGTGTGCGG 321 175 1623 Antisense
TATGCCCCAATGACTTCTCTCGGGC 457 655 1660 Antisense
GTCAACCAAATTCACACGTCTTGCC 607 463 1693 Antisense
ACACGTCTTGCCACTCGGAAATTGA 550 109 1706 Antisense
GGAAATTGATCACCATCTTCTACAG 646 525 1722 Antisense
Sequence Source Affymetrix Proprietary Database