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[190304_at] Adenosine A3 receptor

Description ZK721.4 /REP_DB=WormBase Gene ID /WP=CE05108 /TR=Q9GYF3 /GB=AAG01566.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=Adenosine A3 receptor
Cluster 6grp_total > 08      4grp_total > 62      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 51.9
(1.7)
A 		60.5
(3)
A 		36.3
(-0.7)
A 		21.6
(-3)
A 		39
B 39.4
(3)
A 		23.1
(0.2)
A 		36.6
(2.5)
A 		4.8
(-3)
A 		35
C 39.6
(3)
A 		2.7
(-3)
A 		39.4
(3)
A 		32.6
(1.9)
A 		37
avr 43.6
(3) 		28.8
(-0.7) 		37.4
(1.4) 		19.7
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 79.9
(3)
A 		21.1
(-3)
A 		38.2
(-1.3)
A 		33.9
(-1.7)
A 		42.2
(-0.8)
A 		74.6
(2.5)
A 		59
B 68.5
(3)
A 		23.3
(-1.1)
A 		7.3
(-2.6)
A 		56.9
(1.9)
A 		28.4
(-0.7)
A 		2.8
(-3)
A 		66
C 51.8
(1)
A 		48
(0.6)
A 		72.4
(3)
A 		10.9
(-3)
A 		27.6
(-1.4)
A 		29.5
(-1.2)
A 		62
avr 66.7
(3) 		30.8
(-3) 		39.3
(-1.6) 		33.9
(-2.5) 		32.7
(-2.7) 		35.6
(-2.2) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 18.9
(3)
A 		13.1
(0.8)
A 		9.5
(-0.6)
A 		3.2
(-3)
A 		16
B 12.6
(3)
A 		5.7
(-0.6)
A 		8.5
(0.9)
A 		1
(-3)
A 		12
C 13.1
(2.7)
A 		0.8
(-3)
A 		13.7
(3)
A 		5.5
(-0.8)
A 		13
avr 14.9
(3) 		6.5
(-1.3) 		10.6
(0.8) 		3.2
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 14.7
(1)
A 		7.5
(-3)
A 		8.3
(-2.6)
A 		8.6
(-2.4)
A 		12.7
(-0.1)
A 		18.2
(3)
A 		11
B 23.8
(3)
A 		7.8
(-1.2)
A 		1.8
(-2.8)
A 		15.1
(0.7)
A 		11.6
(-0.2)
A 		1
(-3)
A 		23
C 19.2
(3)
A 		14.6
(1.4)
A 		18.4
(2.7)
A 		2.2
(-3)
A 		8.9
(-0.6)
A 		9.9
(-0.3)
A 		17
avr 19.2
(3) 		10
(-2.2) 		9.5
(-2.5) 		8.6
(-3) 		11.1
(-1.6) 		9.7
(-2.4) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190304_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17172
Sequence Type Exemplar sequence
Representative Public ID ZK721.4 NCBI
Target Description ZK721.4 /REP_DB=WormBase Gene ID /WP=CE05108 /TR=Q9GYF3 /GB=AAG01566.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=Adenosine A3 receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077085
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
ZK721.4.1 ENSEMBL cdna:known chromosome:CEL140:X:8778785:8781478:1 gene:ZK721.4 None
GENEFINDER00000024786 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8778796:8782221:1 None
NM_077085 NCBI Caenorhabditis elegans ZK721.4 (ZK721.4) mRNA, complete cds. A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8780374-8781477(+) 100.0 100.0
Public Domain and Genome References
Gene Title Adenosine A3 receptor
Ensembl ZK721.4
Entrez Gene 191417 Entrez gene
SwissProt Q9GYF4 EMBL-EBI
WormBase CE29651 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG01567 Hypothetical protein ZK721.4 [Caenorhabditis elegans] ref|NP_509486.1| ZK721.4 [Caenorhabditis elegans] 2.0E-97
blast AAG01567 Hypothetical protein ZK721.4 [Caenorhabditis elegans] ref|NP_509486.1| ZK721.4 [Caenorhabditis elegans] 4.0E-96
blast CAE69355 Hypothetical protein CBG15444 [Caenorhabditis briggsae] 2.0E-93
blast CAE69355 Hypothetical protein CBG15444 [Caenorhabditis briggsae] 4.0E-93
blast T27983 hypothetical protein ZK721.4 - Caenorhabditis elegans 3.0E-37
blast T27983 hypothetical protein ZK721.4 - Caenorhabditis elegans 6.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 3.9E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509486.1 4 15-37,50-72,97-119,139-161
ZK721.4.1 4 15-37,50-72,97-119,139-161
GENEFINDER00000024786 5 15-37,50-72,97-119,139-161,181-203
Sequence
Target Sequence 
>C. ELEGANS:190304_AT
ttggaaatttttcgcttcacgacgaaatttaacatacataattgtaggtcccttattgac
tttttgattactgaactaccgctgaaatgtttatgttactgcaaagaaagcgtgcagctg
aaacattttaaatcaaaaaatattgaatatacttttttccgtggttttgaatttttatgc
acaaacttaccataccacttgttaacacacatgtcagcaatttgcctcgaccgtctgatt
gccataattctgtacggaagatacaatgtgttggtgacagtacagagaatcaaaacattt
agcatttcgtgttgggctctttttctcagcacgaatgtaacattattttttctgcaagct
tgttgcatgattcgaccgctcgagtcgttgaactacta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGAAATTTTTCGCTTCACGACGA 232 709 46 Antisense
GTAGGTCCCTTATTGACTTTTTGAT 606 455 89 Antisense
TTTTGATTACTGAACTACCGCTGAA 581 677 107 Antisense
ATGCACAAACTTACCATACCACTTG 61 45 222 Antisense
ACCACTTGTTAACACACATGTCAGC 426 85 239 Antisense
CATGTCAGCAATTTGCCTCGACCGT 64 209 255 Antisense
CGACCGTCTGATTGCCATAATTCTG 79 251 273 Antisense
AGCATTTCGTGTTGGGCTCTTTTTC 408 77 346 Antisense
GGCTCTTTTTCTCAGCACGAATGTA 193 539 360 Antisense
AGCTTGTTGCATGATTCGACCGCTC 152 79 402 Antisense
GACCGCTCGAGTCGTTGAACTACTA 216 383 419 Antisense
Sequence Source Affymetrix Proprietary Database