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[190303_s_at] Glycosyl transferases

Description Y66A7A.6 /REP_DB=WormBase Gene ID /WP=CE15691 /GEN=gly-8 /GB=CAC35860.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Glycosyl transferases
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 62      4grp_high_8_8 > 54      6grp_highest_nonorm > 45      6grp_total > 72      4grp_total > 57      6grp_highest_sub > 03_04      6grp_cgc > 75      6grp_high1_sub > 03      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2737
1 2 3 4 range
A 445.6
(-2.5)
P 		2168.8
(1.5)
P 		2828.3
(3)
P 		212.2
(-3)
P 		2616
B 518.8
(-2.2)
P 		2070.1
(1.7)
P 		2609.8
(3)
P 		194.6
(-3)
A 		2415
C 455.5
(-2.5)
P 		2120.9
(1.2)
P 		2931.4
(3)
P 		226.3
(-3)
P 		2705
avr 473.3
(-2.4) 		2119.9
(1.4) 		2789.8
(3) 		211
(-3) 		2579

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3126
1 2 3 4 5 6 range
A 856.5
(-2.8)
P 		1241.8
(-2)
P 		3599.7
(3)
P 		3344.1
(2.5)
P 		2230
(0.1)
P 		745.3
(-3)
P 		2854
B 961.9
(-2.8)
P 		1253.7
(-2.2)
P 		3858.9
(3)
P 		3574.8
(2.4)
P 		2786.7
(0.8)
P 		879.9
(-3)
P 		2979
C 732.5
(-3)
P 		1277.6
(-1.7)
P 		3154.2
(2.9)
P 		3196.8
(3)
P 		2452.2
(1.2)
P 		874.1
(-2.7)
P 		2464
avr 850.3
(-3) 		1257.7
(-2.1) 		3537.6
(3) 		3371.9
(2.6) 		2489.6
(0.7) 		833.1
(-3) 		2705
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 991
1 2 3 4 range
A 162.2
(-1.9)
P 		470.8
(0.7)
P 		739.4
(3)
P 		31.1
(-3)
P 		708
B 165.5
(-1.7)
P 		511.3
(2)
P 		604.8
(3)
P 		41.5
(-3)
A 		563
C 150.8
(-2.3)
P 		609.8
(0.5)
P 		1021.7
(3)
P 		38.2
(-3)
P 		984
avr 159.5
(-2) 		530.6
(0.9) 		788.6
(3) 		36.9
(-3) 		752

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 974
1 2 3 4 5 6 range
A 157.9
(-3)
P 		441.7
(-0.5)
P 		783.9
(2.4)
P 		848.1
(3)
P 		672.9
(1.5)
P 		181.5
(-2.8)
P 		690
B 334.7
(-3)
P 		417.3
(-2.3)
P 		937.1
(1.5)
P 		946.8
(1.6)
P 		1132.2
(3)
P 		328.1
(-3)
P 		804
C 271.5
(-3)
P 		389.8
(-1.7)
P 		802.8
(3)
P 		642.9
(1.2)
P 		793.5
(2.9)
P 		292.6
(-2.8)
P 		531
avr 254.7
(-3) 		416.3
(-1.4) 		841.3
(2.8) 		812.6
(2.5) 		866.2
(3) 		267.4
(-2.9) 		612
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190303_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6732
Sequence Type Exemplar sequence
Representative Public ID Y66A7A.6 NCBI
Target Description Y66A7A.6 /REP_DB=WormBase Gene ID /WP=CE15691 /GEN=gly-8 /GB=CAC35860.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Glycosyl transferases
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067103(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067103 NCBI Caenorhabditis elegans GLYcosylation related family member (gly-8) (gly-8) mRNA, complete cds. 11/11 A 
SNAP00000036269 ENSEMBL cdna:SNAP chromosome:CEL140:III:11625119:11628077:1 11/11 None
GENEFINDER00000036275 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11625119:11628077:1 11/11 None
Y66A7A.6.1 ENSEMBL cdna:known chromosome:CEL140:III:11624867:11628114:1 gene:Y66A7A.6 11/11 A 
Y66A7A.6.2 ENSEMBL cdna:known chromosome:CEL140:III:11625114:11628091:1 gene:Y66A7A.6 11/11 A 
Y66A7A.6.3 ENSEMBL cdna:known chromosome:CEL140:III:11625118:11628091:1 gene:Y66A7A.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11625114-11628073(+) 100.0 100.0
Public Domain and Genome References
Gene Title Glycosyl transferases
Gene Symbol gly-8
Ensembl Y66A7A.6
Entrez Gene 176595 Entrez gene
SwissProt O45293 EMBL-EBI
WormBase CE15691 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC35860 Hypothetical protein Y66A7A.6 [Caenorhabditis elegans] ref|NP_499504.1| GLYcosylation related family member (gly-8) [Caenorhabditis elegans] sp|O45293|GALT8_CAEEL Probable N-acetylgalactosaminyltransferase 8 (Protein-UDP acetylgalactosaminyltransferase 8) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 8) (pp-GaNTase 8) gb|AAC13678.1| GLY8 [Caenorhabditis elegans] emb|CAA21500.1| Y66A7A.6 [Caenorhabditis elegans] 0.0
blast CAE67685 Hypothetical protein CBG13252 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001173 EMBL-EBI Glycosyl transferase, family 2 8.6E-27
Sequence
Target Sequence 
>C. ELEGANS:190303_S_AT
gatccgagaatattgagctctcgttgaaggcttggctctgcggcggacgtgtcgtagttg
ctccttgctcacgtgtcggccacgtgttcagaatgcgccgcccgtacacctcaaagccag
gaatggataccgctttgtacaacgcggtcagagttgccaaaacgtggctcggcgagtatg
agtccaaattcttcgctgtaaagccacgtggcgcaaagatggtgttcggagatttgacag
agccaatgcaagtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCCGAGAATATTGAGCTCTCGTT 646 415 938 Antisense
GAGCTCTCGTTGAAGGCTTGGCTCT 268 387 952 Antisense
TTGCTCACGTGTCGGCCACGTGTTC 641 701 1002 Antisense
GTCGGCCACGTGTTCAGAATGCGCC 546 471 1012 Antisense
GAATGGATACCGCTTTGTACAACGC 56 333 1058 Antisense
TTTGTACAACGCGGTCAGAGTTGCC 133 659 1071 Antisense
CAAATTCTTCGCTGTAAAGCCACGT 375 193 1122 Antisense
CTTCGCTGTAAAGCCACGTGGCGCA 341 219 1128 Antisense
CGTGGCGCAAAGATGGTGTTCGGAG 558 243 1144 Antisense
GGTGTTCGGAGATTTGACAGAGCCA 687 499 1158 Antisense
GATTTGACAGAGCCAATGCAAGTGA 193 427 1168 Antisense
Sequence Source Affymetrix Proprietary Database