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[190299_at]

Description W02C12.3 /REP_DB=WormBase Gene ID /WP=CE14416 /CHR=4 /FEA=Sanger Annotation /DEF=transcription factor (ST.LOUIS) TR:P91527 protein_id:AAB37997.1
Cluster 6grp_total > 17      4grp_total > 22      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 382
1 2 3 4 range
A 596.2
(3)
P 		300.9
(-1.6)
A 		214.3
(-3)
A 		501
(1.5)
P 		382
B 487.5
(2.1)
P 		261.7
(-3)
A 		324.4
(-1.6)
A 		529.7
(3)
P 		268
C 517.7
(2.2)
P 		385.4
(-0.4)
A 		249.8
(-3)
A 		560
(3)
P 		310
avr 533.8
(3) 		316
(-1.8) 		262.8
(-3) 		530.2
(2.9) 		271

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 509
1 2 3 4 5 6 range
A 595.2
(3)
P 		279.3
(-1.4)
P 		277
(-1.4)
P 		172.6
(-2.9)
A 		161.9
(-3)
M 		322
(-0.8)
P 		433
B 425.3
(3)
P 		353.5
(1.4)
P 		320.4
(0.7)
M 		217.2
(-1.6)
M 		155.4
(-3)
A 		245.4
(-1)
P 		270
C 664.8
(3)
P 		333.6
(-1)
P 		183
(-2.8)
A 		200.1
(-2.6)
A 		273.8
(-1.7)
P 		168
(-3)
A 		497
avr 561.8
(3) 		322.1
(-0.9) 		260.1
(-2) 		196.6
(-3) 		197
(-3) 		245.1
(-2.2) 		365
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 161
1 2 3 4 range
A 217.1
(3)
P 		65.3
(-2.7)
A 		56
(-3)
A 		73.3
(-2.4)
P 		161
B 155.5
(3)
P 		64.6
(-3)
A 		75.2
(-2.3)
A 		112.9
(0.2)
P 		91
C 171.4
(3)
P 		110.8
(-1.3)
A 		87.1
(-3)
A 		94.4
(-2.5)
P 		84
avr 181.3
(3) 		80.2
(-2.6) 		72.8
(-3) 		93.5
(-1.9) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 206
1 2 3 4 5 6 range
A 109.7
(3)
P 		99.3
(2.1)
P 		60.3
(-1.5)
P 		43.8
(-3)
A 		48.9
(-2.5)
M 		78.4
(0.2)
P 		66
B 148
(3)
P 		117.7
(1)
P 		77.8
(-1.7)
M 		57.5
(-3)
M 		63.1
(-2.6)
A 		91.5
(-0.7)
P 		91
C 246.4
(3)
P 		101.8
(-1.2)
P 		46.6
(-2.8)
A 		40.2
(-3)
A 		88.6
(-1.6)
P 		56.3
(-2.5)
A 		206
avr 168
(3) 		106.3
(-0.1) 		61.6
(-2.3) 		47.2
(-3) 		66.9
(-2) 		75.4
(-1.6) 		121
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190299_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10792
Sequence Type Exemplar sequence
Representative Public ID W02C12.3 NCBI
Target Description W02C12.3 /REP_DB=WormBase Gene ID /WP=CE14416 /CHR=4 /FEA=Sanger Annotation /DEF=transcription factor (ST.LOUIS) TR:P91527 protein_id:AAB37997.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028244(11), NM_001028241(11), NM_068060(11), NM_001028240(11), NM_001028242(11), NM_001028243(11), NM_068061(11), NM_001028245(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028244 NCBI Caenorhabditis elegans W02C12.3g (W02C12.3) mRNA, complete cds. 11/11 None
NM_001028241 NCBI Caenorhabditis elegans W02C12.3d (W02C12.3) mRNA, complete cds. 11/11 None
NM_068060 NCBI Caenorhabditis elegans W02C12.3b (W02C12.3) mRNA, complete cds. 11/11 None
NM_001028240 NCBI Caenorhabditis elegans W02C12.3c (W02C12.3) mRNA, complete cds. 11/11 None
NM_001028242 NCBI Caenorhabditis elegans W02C12.3e (W02C12.3) mRNA, complete cds. 11/11 None
NM_001028243 NCBI Caenorhabditis elegans W02C12.3f (W02C12.3) mRNA, complete cds. 11/11 None
NM_068061 NCBI Caenorhabditis elegans W02C12.3a (W02C12.3) mRNA, complete cds. 11/11 None
NM_001028245 NCBI Caenorhabditis elegans W02C12.3h (W02C12.3) mRNA, complete cds. 11/11 None
SNAP00000027730 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4015753:4018975:-1 11/11 None
GENEFINDER00000027733 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4015753:4018975:-1 11/11 None
W02C12.3g ENSEMBL cdna:known chromosome:CEL140:IV:4014772:4019036:-1 gene:W02C12.3 11/11 A 
W02C12.3d.1 ENSEMBL cdna:known chromosome:CEL140:IV:4014793:4028121:-1 gene:W02C12.3 11/11 A 
W02C12.3d.2 ENSEMBL cdna:known chromosome:CEL140:IV:4014793:4027057:-1 gene:W02C12.3 11/11 A 
W02C12.3d.3 ENSEMBL cdna:known chromosome:CEL140:IV:4015744:4028123:-1 gene:W02C12.3 11/11 None
W02C12.3a ENSEMBL cdna:known chromosome:CEL140:IV:4015753:4018975:-1 gene:W02C12.3 11/11 None
W02C12.3c ENSEMBL cdna:known chromosome:CEL140:IV:4015753:4028080:-1 gene:W02C12.3 11/11 None
W02C12.3b ENSEMBL cdna:known chromosome:CEL140:IV:4015753:4028080:-1 gene:W02C12.3 11/11 None
W02C12.3h.2 ENSEMBL cdna:known chromosome:CEL140:IV:4015753:4018325:-1 gene:W02C12.3 11/11 None
W02C12.3h.1 ENSEMBL cdna:known chromosome:CEL140:IV:4015753:4018956:-1 gene:W02C12.3 11/11 None
W02C12.3e ENSEMBL cdna:known chromosome:CEL140:IV:4015753:4027057:-1 gene:W02C12.3 11/11 None
W02C12.3f ENSEMBL cdna:known chromosome:CEL140:IV:4015753:4018975:-1 gene:W02C12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4015758-4018981(-) 100.0 100.0
Public Domain and Genome References
Ensembl W02C12.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO91678 Hypothetical protein W02C12.3g [Caenorhabditis elegans] ref|NP_001023415.1| W02C12.3g [Caenorhabditis elegans] 0.0
blast AAB37997 Hypothetical protein W02C12.3a [Caenorhabditis elegans] ref|NP_500462.1| W02C12.3a [Caenorhabditis elegans] 0.0
blast AAO91674 Hypothetical protein W02C12.3c [Caenorhabditis elegans] ref|NP_001023411.1| W02C12.3c [Caenorhabditis elegans] 0.0
blast AAO91675 Hypothetical protein W02C12.3d [Caenorhabditis elegans] ref|NP_001023412.1| W02C12.3d [Caenorhabditis elegans] 0.0
blast AAO91676 Hypothetical protein W02C12.3e [Caenorhabditis elegans] ref|NP_001023413.1| W02C12.3e [Caenorhabditis elegans] 0.0
blast AAK73899 Hypothetical protein W02C12.3b [Caenorhabditis elegans] ref|NP_500461.1| W02C12.3b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001092 EMBL-EBI Basic helix-loop-helix dimerization domain bHLH 3.3E-17
Pfam IPR001092 EMBL-EBI Basic helix-loop-helix dimerization domain bHLH 3.3E-17
Pfam IPR001092 EMBL-EBI Basic helix-loop-helix dimerization domain bHLH 3.3E-17
Pfam IPR001092 EMBL-EBI Basic helix-loop-helix dimerization domain bHLH 3.3E-17
Pfam IPR001092 EMBL-EBI Basic helix-loop-helix dimerization domain bHLH 3.3E-17
Pfam IPR001092 EMBL-EBI Basic helix-loop-helix dimerization domain bHLH 3.3E-17
Pfam IPR001092 EMBL-EBI Basic helix-loop-helix dimerization domain bHLH 3.3E-17
Sequence
Target Sequence 
>C. ELEGANS:190299_AT
aaatcgctggaatcgacggctcacaagtacgccgaccgggtgaaagagctcgaggagatg
ctcgccaggcagggagtgcaggtcccgccatcgcatcttccaccgatcccgaaagtgatc
gagcgaccgattaagcaggaaatcgacgagtcgccaccaaatcacacgccgaccggatcg
tttgtgtcctcatccggcttcctatccgaggtgacaaacaacaccgccgccatgcagatc
acatcgccgaacgactcgcgcccgaacaacttcatgaacaactcggcgccgtcggacagc
ttcttctcggtcggatcggctagcccgccagattataggacgagcagcggcaccgcgtcg
tggaagctgcccggatcgaacgccttctccgacctcatgatggacgatctcaacccaatg
atgaacggcgatccactcatctcatcggccggcgctcatccatcaccacacttccacagc
tcacaaatgtcaccagacattcattgggacgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCGCTGGAATCGACGGCTCACA 670 117 925 Antisense
CGACGGCTCACAAGTACGCCGACCG 621 251 938 Antisense
GATGCTCGCCAGGCAGGGAGTGCAG 508 413 981 Antisense
CGGCTTCCTATCCGAGGTGACAAAC 352 241 1119 Antisense
ATGCAGATCACATCGCCGAACGACT 371 41 1156 Antisense
ACAACTTCATGAACAACTCGGCGCC 345 113 1190 Antisense
GCTAGCCCGCCAGATTATAGGACGA 356 303 1243 Antisense
TTCTCCGACCTCATGATGGACGATC 610 691 1309 Antisense
TGATGAACGGCGATCCACTCATCTC 78 567 1343 Antisense
ACTTCCACAGCTCACAAATGTCACC 133 105 1394 Antisense
GTCACCAGACATTCATTGGGACGCC 469 465 1413 Antisense
Sequence Source Affymetrix Proprietary Database