[Home] | [Total List]

[190297_s_at] alcohol dehydrogenase

Description F36H9.3 /REP_DB=WormBase Gene ID /WP=CE09969 /TR=O16619 /GB=AAB66092.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=alcohol dehydrogenase
Cluster 4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_total > 28      4grp_total > 10      6grp_cgc > 05      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 79.1
(-3)
P 		97.2
(0.9)
P 		86.6
(-1.4)
P 		106.6
(3)
P 		28
B 80.4
(-2.9)
P 		79.6
(-3)
P 		84
(-2.4)
P 		124
(3)
P 		44
C 94.5
(-0.7)
P 		92.1
(-2.5)
P 		91.5
(-3)
P 		99.2
(3)
P 		8
avr 84.7
(-3) 		89.6
(-1.8) 		87.4
(-2.4) 		109.9
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 102.1
(3)
P 		49.1
(-1.1)
M 		42.8
(-1.6)
A 		25.1
(-3)
A 		79.4
(1.2)
P 		45.9
(-1.4)
P 		77
B 76.8
(2.3)
P 		82.3
(3)
P 		74.9
(2.1)
P 		31.6
(-3)
A 		56.4
(-0.1)
P 		72.9
(1.9)
P 		51
C 78.9
(3)
P 		57.9
(0.3)
P 		42.4
(-1.8)
A 		54.8
(-0.1)
A 		32.9
(-3)
A 		47.3
(-1.1)
P 		46
avr 85.9
(3) 		63.1
(0.2) 		53.4
(-1) 		37.2
(-3) 		56.2
(-0.7) 		55.4
(-0.8) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 28.8
(3)
P 		21.1
(-0.5)
P 		22.6
(0.2)
P 		15.6
(-3)
P 		13
B 25.6
(2.3)
P 		19.7
(-2.8)
P 		19.5
(-3)
P 		26.4
(3)
P 		7
C 31.3
(2.8)
P 		26.5
(0.9)
P 		31.9
(3)
P 		16.7
(-3)
P 		15
avr 28.6
(3) 		22.4
(-1.1) 		24.7
(0.4) 		19.6
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 18.8
(1.2)
P 		17.5
(0.8)
M 		9.3
(-2)
A 		6.4
(-3)
A 		24
(3)
P 		11.2
(-1.4)
P 		18
B 26.7
(2.8)
P 		27.4
(3)
P 		18.2
(0.1)
P 		8.4
(-3)
A 		22.9
(1.6)
P 		27.2
(2.9)
P 		19
C 29.3
(3)
P 		17.7
(-0.7)
P 		10.8
(-2.9)
A 		11
(-2.9)
A 		10.6
(-3)
A 		15.8
(-1.3)
P 		19
avr 24.9
(3) 		20.9
(1.5) 		12.8
(-1.5) 		8.6
(-3) 		19.2
(0.9) 		18.1
(0.5) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190297_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14954
Sequence Type Exemplar sequence
Representative Public ID F36H9.3 NCBI
Target Description F36H9.3 /REP_DB=WormBase Gene ID /WP=CE09969 /TR=O16619 /GB=AAB66092.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=alcohol dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071100(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071100 NCBI Caenorhabditis elegans DeHydrogenases, Short chain family member (dhs-13) (dhs-13) mRNA, complete cds. 11/11 None
SNAP00000002193 ENSEMBL cdna:SNAP chromosome:CEL140:V:1765666:1771556:-1 11/11 None
GENEFINDER00000002199 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1765666:1771556:-1 11/11 None
F36H9.3 ENSEMBL cdna:known chromosome:CEL140:V:1765666:1771556:-1 gene:F36H9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1765665-1771556(-) 100.0 100.0
Public Domain and Genome References
Gene Title alcohol dehydrogenase
Gene Symbol dhs-13
Ensembl F36H9.3
Entrez Gene 178658 Entrez gene
SwissProt O16619 EMBL-EBI
WormBase CE09969 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:255240_AT short-chain dehydrogenase/reductase (SDR) family protein at
CANINE:1601592_X_AT similar to peroxisomal short-chain alcohol dehydrogenase cfa
CANINE:1589630_X_AT similar to peroxisomal short-chain alcohol dehydrogenase cfa
CANINE_2:CFA.411.1.A1_AT similar to peroxisomal short-chain alcohol dehydrogenase cfa
CANINE_2:CFAAFFX.18161.1.S1_S_AT similar to peroxisomal short-chain alcohol dehydrogenase cfa
DROSOPHILA_2:1640492_AT dm
DROSGENOME1:141484_AT dm
HU35KSUBA:RC_AA135492_AT dehydrogenase/reductase (SDR family) member 4 hs
HU35KSUBD:RC_AA262033_S_AT dehydrogenase/reductase (SDR family) member 4 hs
HG-U133A:218021_AT dehydrogenase/reductase (SDR family) member 4 hs
HG-U133_PLUS_2:218021_AT dehydrogenase/reductase (SDR family) member 4 hs
HG-FOCUS:218021_AT dehydrogenase/reductase (SDR family) member 4 hs
HG-U133A_2:218021_AT dehydrogenase/reductase (SDR family) member 4 hs
U133_X3P:G10337604_3P_AT dehydrogenase/reductase (SDR family) member 4 hs
HG-U95B:46220_AT dehydrogenase/reductase (SDR family) member 4 hs
U133_X3P:HS2.382045.1.S1_3P_X_AT Dehydrogenase/reductase (SDR family) member 4 hs
U133_X3P:HS2.382045.1.S1_3P_AT Dehydrogenase/reductase (SDR family) member 4 hs
U133_X3P:1569672_3P_AT Dehydrogenase/reductase (SDR family) member 4 hs
HG-U133_PLUS_2:1569672_AT Dehydrogenase/reductase (SDR family) member 4 hs
RG-U34C:RC_AI103224_AT dehydrogenase/reductase (SDR family) member 4 rn
RAE230A:1370814_AT dehydrogenase/reductase (SDR family) member 4 rn
RAT230_2:1370814_AT dehydrogenase/reductase (SDR family) member 4 rn
RAE230B:1385488_AT dehydrogenase/reductase (SDR family) member 4 rn
RAT230_2:1385488_AT dehydrogenase/reductase (SDR family) member 4 rn
RAE230A:1390370_AT Dehydrogenase/reductase (SDR family) member 4 rn
RAT230_2:1390370_AT Dehydrogenase/reductase (SDR family) member 4 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66092 Dehydrogenases, short chain protein 13 [Caenorhabditis elegans] ref|NP_503501.1| DeHydrogenases, Short chain family member (dhs-13) [Caenorhabditis elegans] 1.0E-140
blast AAB66092 Dehydrogenases, short chain protein 13 [Caenorhabditis elegans] ref|NP_503501.1| DeHydrogenases, Short chain family member (dhs-13) [Caenorhabditis elegans] 1.0E-133
blast CAE56430 Hypothetical protein CBG24129 [Caenorhabditis briggsae] 2.0E-96
blast CAE56430 Hypothetical protein CBG24129 [Caenorhabditis briggsae] 7.0E-90
blast AAH56583 Hypothetical protein MGC65987 [Danio rerio] ref|NP_956861.1| hypothetical protein LOC393539 [Danio rerio] 9.0E-69
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 2.8E-66
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 2.0E-47
Sequence
Target Sequence 
>C. ELEGANS:190297_S_AT
tcgcctcgaaaacattgacgctcacggcacaacagcacacgtcggcaacaagtcggaccg
cacaaaactgatcgacttcacacttgacagattcacgaaactcgacatcctcgtgtcgaa
cgctgccgtcaacccgcactacggtgatctgatgaaagtcaccgactcacaatgggataa
gcttctcgatttgaacgtaaaatccgcattcgaacttacaaaagaggctgtgccgcactt
ggaggcttctggtcggggcaatgtcgtctttgtgtcgtctgtcgccggatactcaccgat
gaacgagattggagcgtattcggtgatgaagacgacgctcacgggattgagcaaatcgtt
ggctttgaatttggccaggcggaatattcgagtcaatagtattgctccgggaatcattca
aaccgacttctcgcaagtcctcttctccgacgaatccgaaaagcagaagtggctctcaca
aattgcacaacgccgattcggtgatccggatgagtgtgccgaggcggtggcgttcctggt
ttccgacgaggctagctacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGCCTCGAAAACATTGACGCTCAC 157 599 177 Antisense
GCACACGTCGGCAACAAGTCGGACC 694 315 211 Antisense
GGACCGCACAAAACTGATCGACTTC 361 523 231 Antisense
GATCGACTTCACACTTGACAGATTC 304 417 246 Antisense
GATTCACGAAACTCGACATCCTCGT 276 429 266 Antisense
GTCAACCCGCACTACGGTGATCTGA 73 465 304 Antisense
TGTCGCCGGATACTCACCGATGAAC 657 557 456 Antisense
GGAATCATTCAAACCGACTTCTCGC 92 533 586 Antisense
CCTCTTCTCCGACGAATCCGAAAAG 630 267 615 Antisense
GCACAACGCCGATTCGGTGATCCGG 371 317 661 Antisense
TGGTTTCCGACGAGGCTAGCTACAT 176 551 713 Antisense
Sequence Source Affymetrix Proprietary Database