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[190296_at] caveolin

Description T13F2.8 /REP_DB=WormBase Gene ID /WP=CE13633 /GEN=cav-1 /TR=SW:Q94051 /GB=CAB03359.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=caveolin
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 67      4grp_highest_8_8 > 0      4grp_high_8_8 > 36      6grp_highest_nonorm > 99      6grp_total > 58      4grp_total > 36      6grp_highest_sub > Cu      6grp_cgc > 28      6grp_high1_sub > Da      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 495
1 2 3 4 range
A 383.1
(-0.6)
P 		583.5
(3)
P 		251
(-3)
P 		480.8
(1.1)
P 		333
B 439.8
(-0.5)
P 		713.9
(3)
P 		245.2
(-3)
P 		404.2
(-1)
P 		469
C 419.8
(-0.5)
P 		698
(3)
P 		219.4
(-3)
P 		319.5
(-1.7)
P 		479
avr 414.2
(-0.5) 		665.1
(3) 		238.5
(-3) 		401.5
(-0.7) 		427

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3407
1 2 3 4 5 6 range
A 1449.3
(-0.7)
P 		636
(-2.2)
P 		338.2
(-2.7)
P 		154.2
(-3)
P 		425.3
(-2.5)
P 		3561.3
(3)
P 		3407
B 1136.1
(-0.5)
P 		671.6
(-1.8)
P 		387.1
(-2.6)
P 		225
(-3)
P 		413.7
(-2.5)
P 		2428.8
(3)
P 		2204
C 1073.1
(-1.2)
P 		627.8
(-2.1)
P 		238.1
(-3)
P 		215.4
(-3)
P 		389.9
(-2.6)
P 		3010.3
(3)
P 		2795
avr 1219.5
(-0.8) 		645.1
(-2) 		321.1
(-2.7) 		198.2
(-3) 		409.6
(-2.5) 		3000.1
(3) 		2802
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 139.5
(3)
P 		126.7
(2)
P 		65.6
(-3)
P 		70.4
(-2.6)
P 		74
B 140.2
(1.2)
P 		176.3
(3)
P 		56.8
(-3)
P 		86.1
(-1.5)
P 		120
C 139
(0.5)
P 		200.7
(3)
P 		76.5
(-2.1)
P 		53.9
(-3)
P 		147
avr 139.6
(1.3) 		167.9
(3) 		66.3
(-3) 		70.1
(-2.8) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 969
1 2 3 4 5 6 range
A 267.2
(-1.3)
P 		226.2
(-1.6)
P 		73.7
(-2.7)
P 		39.1
(-3)
P 		128.3
(-2.4)
P 		867.1
(3)
P 		828
B 395.3
(-0.6)
P 		223.6
(-1.8)
P 		94
(-2.8)
P 		59.6
(-3)
P 		168.1
(-2.2)
P 		905.7
(3)
P 		846
C 397.8
(-0.8)
P 		191.6
(-2.1)
P 		60.6
(-2.9)
P 		43.3
(-3)
P 		126.2
(-2.5)
P 		1007.7
(3)
P 		964
avr 353.4
(-0.9) 		213.8
(-1.9) 		76.1
(-2.8) 		47.3
(-3) 		140.9
(-2.4) 		926.8
(3) 		880
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190296_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10285
Sequence Type Exemplar sequence
Representative Public ID T13F2.8 NCBI
Target Description T13F2.8 /REP_DB=WormBase Gene ID /WP=CE13633 /GEN=cav-1 /TR=SW:Q94051 /GB=CAB03359.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=caveolin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069342(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069342 NCBI Caenorhabditis elegans T13F2.8 (caveolin) mRNA, complete cds. 11/11 A 
SNAP00000043476 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9772506:9773338:1 11/11 None
GENEFINDER00000043492 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9772506:9773338:1 11/11 None
T13F2.8.1 ENSEMBL cdna:known chromosome:CEL140:IV:9772482:9773436:1 gene:T13F2.8 11/11 None
T13F2.8.2 ENSEMBL cdna:known chromosome:CEL140:IV:9772484:9773429:1 gene:T13F2.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9772511-9773344(+) 100.0 100.0
Public Domain and Genome References
Gene Title caveolin
Gene Symbol cav-1
Ensembl T13F2.8
Entrez Gene 177815 Entrez gene
SwissProt Q94051 EMBL-EBI
WormBase CE13633 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16599 caveolar membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03359 Hypothetical protein T13F2.8 [Caenorhabditis elegans] ref|NP_501743.1| T13F2.8 [Caenorhabditis elegans] sp|Q94051|CAV1_CAEEL Caveolin-1 gb|AAB48388.1| caveolin 1.0E-135
blast CAE69013 Hypothetical protein CBG15010 [Caenorhabditis briggsae] 5.0E-95
Protein Domains
Database ID Description E-Value
Pfam IPR001612 EMBL-EBI Caveolin 1.8E-112
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501743.1 2 147-179,199-221
T13F2.8.1 2 147-179,199-221
T13F2.8.2 2 147-179,199-221
SNAP00000043476 2 147-179,199-221
GENEFINDER00000043492 2 147-179,199-221
Sequence
Target Sequence 
>C. ELEGANS:190296_AT
gaagaactggttcacattcggaaagaagaaggctgctccaactgatgagaccaatattga
agaaggtggagcaccgggagatgagccagtgaaggagaagaaagagaagaagtgctggtg
gagtagatgccaaaaaggagaaggcgagcaaaaggaagagaacatcgctatcggagtcga
tctcgtcaatcgtgacgccaactcgatgaacaaccatgtccaactcaactttgaagacat
tttcggagaagccgactcacagcactcatgggattgcgtgtggcgtctgaatcataccgt
attc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAACTGGTTCACATTCGGAAAG 87 333 135 Antisense
GAAGGCTGCTCCAACTGATGAGACC 559 333 162 Antisense
AGCACCGGGAGATGAGCCAGTGAAG 482 77 204 Antisense
GAACATCGCTATCGGAGTCGATCTC 399 351 294 Antisense
GTCGATCTCGTCAATCGTGACGCCA 477 473 310 Antisense
CGTGACGCCAACTCGATGAACAACC 359 245 325 Antisense
GATGAACAACCATGTCCAACTCAAC 697 411 339 Antisense
TTCGGAGAAGCCGACTCACAGCACT 336 695 376 Antisense
GACTCACAGCACTCATGGGATTGCG 463 373 388 Antisense
CATGGGATTGCGTGTGGCGTCTGAA 526 209 401 Antisense
GTGGCGTCTGAATCATACCGTATTC 249 491 414 Antisense
Sequence Source Affymetrix Proprietary Database