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[190292_at] Lectin C-type domain

Description Y68A4B.1 /REP_DB=WormBase Gene ID /WP=CE19261 /TR=Q9XXB8 /GB=CAA19554.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain
Cluster 6grp_total > 51      4grp_total > 34      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 5
(-3)
A 		41
(3)
A 		23.6
(0.1)
A 		39.3
(2.7)
A 		36
B 11.7
(-0.4)
A 		24.2
(3)
A 		7.6
(-1.5)
A 		2.3
(-3)
A 		22
C 30
(-0.3)
A 		28
(-0.8)
A 		17.6
(-3)
A 		45.6
(3)
A 		28
avr 15.6
(-3) 		31.1
(3) 		16.3
(-2.7) 		29.1
(2.2) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 26.8
(3)
A 		4
(-2.7)
A 		6
(-2.2)
A 		26.2
(2.9)
A 		2.6
(-3)
A 		3.5
(-2.8)
A 		24
B 4.7
(-2.8)
A 		5.9
(-2.6)
A 		51.1
(3)
A 		19.1
(-1)
A 		11.6
(-1.9)
A 		2.7
(-3)
A 		48
C 6.2
(-2.7)
A 		33.2
(3)
A 		27
(1.7)
A 		21.4
(0.5)
A 		25.1
(1.3)
A 		4.6
(-3)
A 		29
avr 12.6
(-0.8) 		14.4
(-0.3) 		28
(3) 		22.2
(1.6) 		13.1
(-0.7) 		3.6
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.8
(-3)
A 		8.9
(3)
A 		6.2
(0.7)
A 		5.8
(0.4)
A 		7
B 3.7
(0.5)
A 		6
(3)
A 		1.8
(-1.6)
A 		0.5
(-3)
A 		6
C 9.9
(3)
A 		8.1
(0.2)
A 		6.1
(-3)
A 		7.7
(-0.5)
A 		4
avr 5.1
(-2.2) 		7.7
(3) 		4.7
(-3) 		4.7
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 4.9
(1.2)
A 		1.4
(-2.4)
A 		1.3
(-2.5)
A 		6.7
(3)
A 		0.8
(-3)
A 		0.9
(-2.9)
A 		6
B 1.6
(-2.7)
A 		2
(-2.5)
A 		12.4
(3)
A 		5.1
(-0.8)
A 		4.7
(-1.1)
A 		1
(-3)
A 		11
C 2.3
(-2.4)
A 		10.1
(3)
A 		6.9
(0.8)
A 		4.3
(-1)
A 		8.1
(1.6)
A 		1.5
(-3)
A 		9
avr 2.9
(-1.1) 		4.5
(0.5) 		6.9
(3) 		5.4
(1.4) 		4.5
(0.5) 		1.1
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190292_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14192
Sequence Type Exemplar sequence
Representative Public ID Y68A4B.1 NCBI
Target Description Y68A4B.1 /REP_DB=WormBase Gene ID /WP=CE19261 /TR=Q9XXB8 /GB=CAA19554.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Lectin C-type domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074969(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074969 NCBI Caenorhabditis elegans Y68A4B.1 (Y68A4B.1) mRNA, complete cds. 11/11 None
GENEFINDER00000008405 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17246266:17250906:-1 10/11 None
Y68A4B.1 ENSEMBL cdna:known chromosome:CEL140:V:17249902:17250940:-1 gene:Y68A4B.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008403 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17249901-17250940(-) 100.0 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain
Ensembl Y68A4B.1
Entrez Gene 190530 Entrez gene
SwissProt Q9XXB8 EMBL-EBI
WormBase CE19261 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19555 Hypothetical protein Y68A4B.2 [Caenorhabditis elegans] ref|NP_507369.1| Y68A4B.2 [Caenorhabditis elegans] 5.0E-94
blast CAA19554 Hypothetical protein Y68A4B.1 [Caenorhabditis elegans] ref|NP_507370.1| Y68A4B.1 [Caenorhabditis elegans] 7.0E-89
blast CAA19554 Hypothetical protein Y68A4B.1 [Caenorhabditis elegans] ref|NP_507370.1| Y68A4B.1 [Caenorhabditis elegans] 2.0E-80
blast AAG24215 Hypothetical protein W10G11.6 [Caenorhabditis elegans] ref|NP_494581.1| W10G11.6 [Caenorhabditis elegans] 5.0E-38
blast CAB03933 Hypothetical protein C31G12.2 [Caenorhabditis elegans] ref|NP_507555.1| C31G12.2 [Caenorhabditis elegans] 5.0E-32
blast AAB95014 Hypothetical protein W04H10.4 [Caenorhabditis elegans] ref|NP_493771.1| W04H10.4 [Caenorhabditis elegans] 8.0E-30
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000008405 1 340-362
Sequence
Target Sequence 
>C. ELEGANS:190292_AT
ggtgtttactgctgttggagatcgcacagttgcggacagtgctgtgctgcggagggagca
gtcgttagtggagttcagaatcaagctgagttacaatacatgcaagattcatacgtctcg
ctttacggttctgaaacgggatcattttgggttggtgctaaaaggacggccgcatgtctt
gaatcgcaattgaccttaacatgtaacgcactgaattctcttgaatggacagacggctcg
acgaccggtaccgatggatttttgtggagaaacggagacccgaacaatggagggatttat
tacccagcgtataaggataattgtctcgctgttgacgccagagtgggtttattggctgat
caaccatgcggaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGTTTACTGCTGTTGGAGATCGC 500 499 46 Antisense
CAGTTGCGGACAGTGCTGTGCTGCG 708 205 72 Antisense
GCGGAGGGAGCAGTCGTTAGTGGAG 543 291 94 Antisense
CATGCAAGATTCATACGTCTCGCTT 300 211 144 Antisense
ATACGTCTCGCTTTACGGTTCTGAA 296 23 156 Antisense
ACGGGATCATTTTGGGTTGGTGCTA 19 97 181 Antisense
GTTGGTGCTAAAAGGACGGCCGCAT 576 435 196 Antisense
GGCCGCATGTCTTGAATCGCAATTG 326 543 213 Antisense
GTAACGCACTGAATTCTCTTGAATG 205 463 248 Antisense
GATAATTGTCTCGCTGTTGACGCCA 154 423 361 Antisense
ATTGGCTGATCAACCATGCGGAACA 379 3 396 Antisense
Sequence Source Affymetrix Proprietary Database