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[190291_at] paired box protein like

Description R13.2 /REP_DB=WormBase Gene ID /WP=CE06319 /TR=Q21972 /GB=CAA97441.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=paired box protein like
Cluster 6grp_total > 93      4grp_total > 40      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 6
(-3)
A 		18
(-1.6)
A 		56
(3)
A 		34.6
(0.4)
A 		50
B 38.8
(3)
A 		8.5
(-3)
A 		34.4
(2.1)
A 		17.4
(-1.2)
A 		30
C 30.4
(2)
A 		8.1
(-3)
A 		34.7
(3)
A 		11.5
(-2.2)
A 		27
avr 25.1
(-0.3) 		11.5
(-3) 		41.7
(3) 		21.2
(-1.1) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 258
1 2 3 4 5 6 range
A 23.8
(-2.8)
A 		41.5
(-2.2)
A 		16.8
(-3)
A 		212.5
(3)
P 		173.1
(1.8)
M 		40.8
(-2.3)
A 		196
B 3.2
(-3)
A 		18.2
(-2.6)
A 		50.1
(-1.7)
A 		128.9
(0.6)
A 		213.9
(3)
P 		19.1
(-2.5)
A 		211
C 5.4
(-3)
A 		51.3
(-1.9)
A 		43.7
(-2.1)
A 		167
(0.8)
A 		260.8
(3)
P 		41.9
(-2.1)
A 		255
avr 10.8
(-3) 		37
(-2.2) 		36.9
(-2.2) 		169.5
(1.6) 		215.9
(3) 		33.9
(-2.3) 		205
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.2
(-3)
A 		3.9
(-2.2)
A 		14.6
(3)
A 		5.1
(-1.6)
A 		12
B 12.4
(3)
A 		2.1
(-3)
A 		8
(0.4)
A 		3.7
(-2.1)
A 		10
C 10.1
(1.8)
A 		2.3
(-2.8)
A 		12.1
(3)
A 		1.9
(-3)
A 		10
avr 8.2
(0.7) 		2.8
(-3) 		11.6
(3) 		3.6
(-2.5) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 4.4
(-2.9)
A 		14.8
(-1.7)
A 		3.7
(-3)
A 		53.9
(3)
P 		52.2
(2.8)
M 		9.9
(-2.3)
A 		50
B 1.1
(-3)
A 		6.1
(-2.7)
A 		12.2
(-2.2)
A 		34.2
(-0.7)
A 		86.9
(3)
P 		7.1
(-2.6)
A 		86
C 2
(-3)
A 		15.7
(-2)
A 		11.1
(-2.3)
A 		33.6
(-0.7)
A 		84.4
(3)
P 		14
(-2.1)
A 		82
avr 2.5
(-3) 		12.2
(-2.2) 		9
(-2.5) 		40.6
(0.2) 		74.5
(3) 		10.3
(-2.4) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190291_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10311
Sequence Type Exemplar sequence
Representative Public ID R13.2 NCBI
Target Description R13.2 /REP_DB=WormBase Gene ID /WP=CE06319 /TR=Q21972 /GB=CAA97441.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=paired box protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069605(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069605 NCBI Caenorhabditis elegans R13.2 (R13.2) mRNA, complete cds. 11/11 None
GENEFINDER00000041978 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10826000:10827993:-1 11/11 None
R13.2 ENSEMBL cdna:known chromosome:CEL140:IV:10826000:10827311:-1 gene:R13.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041973 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10826005-10827317(-) 100.0 100.0
Public Domain and Genome References
Gene Title paired box protein like
Ensembl R13.2
Entrez Gene 187848 Entrez gene
SwissProt Q21972 EMBL-EBI
WormBase CE06319 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7275 development inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAE70844 Hypothetical protein CBG17628 [Caenorhabditis briggsae] 3.0E-93
blast CAA97441 Hypothetical protein R13.2 [Caenorhabditis elegans] ref|NP_502006.1| R13.2 [Caenorhabditis elegans] 1.0E-77
blast CAA97441 Hypothetical protein R13.2 [Caenorhabditis elegans] ref|NP_502006.1| R13.2 [Caenorhabditis elegans] 4.0E-77
blast CAE70844 Hypothetical protein CBG17628 [Caenorhabditis briggsae] 2.0E-67
blast AAA81747 Hypothetical protein F48B9.5 [Caenorhabditis elegans] ref|NP_508396.3| F48B9.5 [Caenorhabditis elegans] 2.0E-13
blast AAA81747 Hypothetical protein F48B9.5 [Caenorhabditis elegans] ref|NP_508396.3| F48B9.5 [Caenorhabditis elegans] 7.0E-13
Protein Domains
Database ID Description E-Value
scop a.4.1.Paired domain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Paired domain 2.99999990479657E-21
scop a.4.1.Paired domain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Paired domain 9.99999968265523E-21
Pfam IPR001523 EMBL-EBI Paired box protein, N-terminal 5.0E-12
Pfam IPR001523 EMBL-EBI Paired box protein, N-terminal 5.0E-12
Sequence
Target Sequence 
>C. ELEGANS:190291_AT
atgcaacagaatccgtcacaagacggcaggaaaaatcggaaaaaagggacaaatctctat
ggtcgaccttattgtcctggtcgaccgttatcgatggaagaaagaactcgaattattcaa
ttacataataatggaatgaaagtcaacgccatttcaaaatctttgtgtatttcgcatggc
tgtgtaagtaaaattatcagtcgatttcgagcgacgggagtacttcttcctgcatgttct
cccgaacaaagaaaatctcgaaaacggaaatcgtcaatggaaggttcagcaatggaacaa
agttttattccagtttttgtctcgatgcaagatgcaaatggaaatgagtatctaaacgaa
tattacagtatcccggtcggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCAACAGAATCCGTCACAAGACG 585 43 13 Antisense
GGGACAAATCTCTATGGTCGACCTT 334 495 58 Antisense
CTATGGTCGACCTTATTGTCCTGGT 388 225 69 Antisense
ATTGTCCTGGTCGACCGTTATCGAT 101 3 83 Antisense
AAAGTCAACGCCATTTCAAAATCTT 377 121 151 Antisense
ATCTTTGTGTATTTCGCATGGCTGT 86 33 171 Antisense
TTATCAGTCGATTTCGAGCGACGGG 481 659 206 Antisense
TCGAGCGACGGGAGTACTTCTTCCT 447 599 219 Antisense
TTCCTGCATGTTCTCCCGAACAAAG 66 699 239 Antisense
TTATTCCAGTTTTTGTCTCGATGCA 44 679 317 Antisense
GAATATTACAGTATCCCGGTCGGAA 364 323 370 Antisense
Sequence Source Affymetrix Proprietary Database