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[190287_at]

Description F16B4.12 /REP_DB=WormBase Gene ID /WP=CE24906 /TR=O44638 /GB=AAK68332.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 26      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 80      6grp_total > 26      4grp_total > 03      6grp_highest_sub > Cu      6grp_cgc > 24      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 678
1 2 3 4 range
A 232
(-0.8)
P 		101.7
(-2.4)
P 		53.8
(-3)
P 		542.1
(3)
P 		488
B 161.6
(-2.3)
P 		168.4
(-2.2)
P 		107.6
(-3)
P 		547.1
(3)
P 		440
C 246.4
(-2)
P 		169.9
(-2.8)
P 		152.6
(-3)
P 		731.9
(3)
P 		579
avr 213.3
(-1.7) 		146.7
(-2.5) 		104.7
(-3) 		607
(3) 		502

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 283
1 2 3 4 5 6 range
A 321.8
(3)
P 		206.9
(-1)
P 		241.9
(0.2)
P 		174.1
(-2.1)
P 		148.7
(-3)
P 		171.1
(-2.2)
P 		173
B 347.1
(3)
P 		314.2
(2.1)
P 		242.7
(0)
P 		138.1
(-3)
P 		159.5
(-2.4)
P 		230.4
(-0.4)
P 		209
C 284.9
(0.8)
P 		386.9
(3)
P 		143.6
(-2.2)
P 		171.9
(-1.6)
P 		104.1
(-3)
P 		221.6
(-0.5)
P 		283
avr 317.9
(3) 		302.7
(2.5) 		209.4
(-0.6) 		161.4
(-2.2) 		137.4
(-3) 		207.7
(-0.7) 		181
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 84.5
(3)
P 		22.1
(-2.3)
P 		14.1
(-3)
P 		79.4
(2.6)
P 		70
B 51.5
(-1.3)
P 		41.6
(-1.9)
P 		24.9
(-3)
P 		116.6
(3)
P 		92
C 81.6
(-0.4)
P 		48.9
(-3)
P 		53.2
(-2.7)
P 		123.4
(3)
P 		75
avr 72.5
(0.3) 		37.5
(-2.5) 		30.7
(-3) 		106.5
(3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 59.3
(0.3)
P 		73.6
(3)
P 		52.7
(-0.9)
P 		44.1
(-2.5)
P 		44.9
(-2.4)
P 		41.7
(-3)
P 		32
B 120.8
(3)
P 		104.6
(1.8)
P 		58.9
(-1.4)
P 		36.6
(-3)
P 		64.8
(-1)
P 		85.9
(0.5)
P 		84
C 105.6
(2.1)
P 		118.1
(3)
P 		36.6
(-2.8)
P 		34.6
(-2.9)
P 		33.7
(-3)
P 		74.2
(-0.1)
P 		84
avr 95.2
(2.6) 		98.8
(3) 		49.4
(-1.9) 		38.4
(-3) 		47.8
(-2.1) 		67.3
(-0.1) 		60
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190287_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15048
Sequence Type Exemplar sequence
Representative Public ID F16B4.12 NCBI
Target Description F16B4.12 /REP_DB=WormBase Gene ID /WP=CE24906 /TR=O44638 /GB=AAK68332.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171438(11), NM_171921(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171438 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-117) (nhr-117) mRNA, complete cds. 11/11 None
NM_171921 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-117) (nhr-117) mRNA, complete cds. 11/11 None
SNAP00000018924 ENSEMBL cdna:SNAP chromosome:CEL140:V:1619281:1621346:-1 11/11 None
GENEFINDER00000018935 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1619364:1621346:-1 10/11 None
F16B4.12a ENSEMBL cdna:known chromosome:CEL140:V:1619023:1621365:-1 gene:F16B4.12 11/11 None
F16B4.12b ENSEMBL cdna:known chromosome:CEL140:V:1619244:1621349:-1 gene:F16B4.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1619280-1621346(-) 100.0 100.0
Public Domain and Genome References
Ensembl F16B4.12
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM29674 Nuclear hormone receptor family protein 117, isoform a [Caenorhabditis elegans] ref|NP_741511.1| Nuclear Hormone Receptor family member (nhr-117) [Caenorhabditis elegans] 0.0
blast AAK68332 Nuclear hormone receptor family protein 117, isoform b [Caenorhabditis elegans] ref|NP_741512.1| Nuclear Hormone Receptor family member (nhr-117) [Caenorhabditis elegans] gb|AAO39207.1| nuclear receptor NHR-117 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.8E-8
Sequence
Target Sequence 
>C. ELEGANS:190287_AT
gcggcaaaatggctgtcatattcggatagaattcgaaatttggatgatgaattgaaaata
caaattttgcaatgtatttggttcaactggggacggttagaacgaatcgcaacgacggca
aaaatgaggaataaacggaagtgtgggaaaaagcagtttgtattttcgaataatatacta
cttgactacgatgaaatgtcttctgatttgagcttctggtcaaattatacattcgaggaa
atgaaatacttttttataccgactgaaatgttttacgatgaggtgatttgtgaaatggaa
gaagtacaacctgacaatatggaaactactttcattataagccttatgtgcttccatcta
acaggaaaacaatttggtgggcaagttcaagaagaaatggatcaactgcaagatctctta
tcggatgaacttcacgagtattatctaaagaaaaatatgacgatgtactctttgcgactc
aagcagttgatgaaaatcaaggaaaagttcctcaagcttcgatataaacgctgtgaaaaa
tataagattgcaggaatatttgaggcgtttcatacgaacttgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGGCAAAATGGCTGTCATATTCGG 532 293 706 Antisense
TGTATTTGGTTCAACTGGGGACGGT 289 561 778 Antisense
GGGACGGTTAGAACGAATCGCAACG 27 495 795 Antisense
ATGTCTTCTGATTTGAGCTTCTGGT 339 49 901 Antisense
GAGCTTCTGGTCAAATTATACATTC 172 389 915 Antisense
GCCTTATGTGCTTCCATCTAACAGG 689 281 1046 Antisense
GATCTCTTATCGGATGAACTTCACG 577 419 1117 Antisense
TATGACGATGTACTCTTTGCGACTC 55 657 1161 Antisense
GTACTCTTTGCGACTCAAGCAGTTG 699 457 1170 Antisense
GGAAAAGTTCCTCAAGCTTCGATAT 197 527 1206 Antisense
TGAGGCGTTTCATACGAACTTGTCA 582 563 1266 Antisense
Sequence Source Affymetrix Proprietary Database