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[190285_at] phosphate transporter

Description ZK54.1 /REP_DB=WormBase Gene ID /WP=CE27356 /TR=Q23514 /GB=AAK39396.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=phosphate transporter
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 14      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 61      6grp_total > 04      4grp_total > 45      6grp_highest_sub > De      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 513
1 2 3 4 range
A 617.8
(3)
P 		418.7
(-0.2)
P 		300.7
(-2)
P 		239.2
(-3)
P 		379
B 605.3
(3)
P 		399.6
(0)
P 		327.6
(-1)
P 		187.1
(-3)
P 		418
C 699.6
(3)
P 		476.1
(-0)
P 		329.5
(-2)
P 		254.5
(-3)
P 		445
avr 640.9
(3) 		431.5
(-0) 		319.3
(-1.7) 		226.9
(-3) 		414

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 367
1 2 3 4 5 6 range
A 315.9
(-1.6)
P 		434.4
(3)
P 		357.9
(0)
P 		358.1
(0.1)
P 		334.7
(-0.9)
P 		279.1
(-3)
P 		155
B 450.5
(2.4)
P 		477.3
(3)
P 		353.6
(0)
P 		355.5
(0.1)
P 		343.3
(-0.2)
P 		228.9
(-3)
P 		248
C 595.6
(3)
P 		421.3
(0.1)
P 		374.4
(-0.7)
P 		299.6
(-2)
P 		367.8
(-0.8)
P 		239
(-3)
P 		357
avr 454
(3) 		444.3
(2.7) 		362
(0.3) 		337.7
(-0.4) 		348.6
(-0.1) 		249
(-3) 		205
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 197
1 2 3 4 range
A 224.9
(3)
P 		90.9
(-1.2)
P 		78.6
(-1.6)
P 		35
(-3)
P 		190
B 193
(3)
P 		98.7
(-0.7)
P 		75.9
(-1.6)
P 		39.9
(-3)
P 		153
C 231.6
(3)
P 		136.9
(-0)
P 		114.8
(-0.7)
P 		42.9
(-3)
P 		189
avr 216.5
(3) 		108.8
(-0.6) 		89.8
(-1.3) 		39.3
(-3) 		177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 58.2
(-3)
P 		154.5
(3)
P 		77.9
(-1.8)
P 		90.8
(-1)
P 		101
(-0.3)
P 		67.9
(-2.4)
P 		96
B 156.7
(2.8)
P 		158.9
(3)
P 		85.9
(-3)
P 		94.2
(-2.3)
P 		139.5
(1.4)
P 		85.4
(-3)
P 		74
C 220.7
(3)
P 		128.5
(-0.4)
P 		95.3
(-1.7)
P 		60.2
(-3)
P 		119
(-0.8)
P 		80
(-2.3)
P 		161
avr 145.2
(2.8) 		147.3
(3) 		86.4
(-2.3) 		81.7
(-2.7) 		119.8
(0.6) 		77.8
(-3) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190285_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17857
Sequence Type Exemplar sequence
Representative Public ID ZK54.1 NCBI
Target Description ZK54.1 /REP_DB=WormBase Gene ID /WP=CE27356 /TR=Q23514 /GB=AAK39396.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=phosphate transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078429(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078429 NCBI Caenorhabditis elegans ZK54.1 (ZK54.1) mRNA, complete cds. 11/11 A 
SNAP00000019861 ENSEMBL cdna:SNAP chromosome:CEL140:X:17460837:17464781:-1 11/11 None
GENEFINDER00000019863 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17460967:17464781:-1 11/11 None
ZK54.1.1 ENSEMBL cdna:known chromosome:CEL140:X:17460537:17464009:-1 gene:ZK54.1 11/11 A 
ZK54.1.2 ENSEMBL cdna:known chromosome:CEL140:X:17460701:17463957:-1 gene:ZK54.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17462554-17466592(-) 100.0 100.0
Public Domain and Genome References
Gene Title phosphate transporter
Ensembl ZK54.1
Entrez Gene 181777 Entrez gene
SwissProt Q23514 EMBL-EBI
WormBase CE31271 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:16286_AT sugar transporter family protein at
ATH1-121501:255691_AT sugar transporter family protein at
DROSOPHILA_2:1633405_S_AT dm
DROSGENOME1:152929_AT dm
Protein Similarities
Method ID Description E-Value
blast AAM69081 Hypothetical protein ZK54.1 [Caenorhabditis elegans] ref|NP_510830.2| ZK54.1 [Caenorhabditis elegans] 0.0
blast CAE58686 Hypothetical protein CBG01860 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510830.2 11 42-64,94-116,123-145,149-171,183-205,210-229,310-328,343-365,372-393,408-430,435-457
ZK54.1.1 11 42-64,94-116,123-145,149-171,183-205,210-229,310-328,343-365,372-393,408-430,435-457
ZK54.1.2 11 42-64,94-116,123-145,149-171,183-205,210-229,310-328,343-365,372-393,408-430,435-457
SNAP00000019861 11 37-59,89-111,118-140,144-166,178-200,205-224,305-323,338-360,367-388,403-425,430-452
GENEFINDER00000019863 10 37-59,89-111,118-140,144-166,178-200,205-224,305-323,338-360,367-389,409-431
Sequence
Target Sequence 
>C. ELEGANS:190285_AT
gcgttgctcggatttgccaatatctacgcaatgagagctaatttgagcattgcaatcgtt
gagatgacttccggaactgaacgaaaagtgaatggaacgacgcttcatgttctcggtgat
tttgaaaactggaccccaatgacgcaaggagttgtgctcagttcctttttttacggctat
atcgtctcccaactgcccggcggatatctcgcatacactcatggagcaaaaaccatcttt
ttcgctggcacatttggaaccgctgtcttcacgctcctcacgccgccattcgccagaatg
ggatacggaatgctcgtttttgctcgcttcatggagggattactcgaaggggtcacttat
ccggcaatgcacgtgatttggagcagatgggcacctccaatggaacagacaaagcttgca
acttttgcattctcaggatcatatttcggaactgttgtcgccatgccactgtccgcgtat
ttgggaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGTTGCTCGGATTTGCCAATATCT 612 291 466 Antisense
AACGACGCTTCATGTTCTCGGTGAT 247 145 561 Antisense
AACTGGACCCCAATGACGCAAGGAG 566 141 592 Antisense
TGTGCTCAGTTCCTTTTTTTACGGC 236 557 618 Antisense
TTTTTACGGCTATATCGTCTCCCAA 29 673 633 Antisense
AACCATCTTTTTCGCTGGCACATTT 71 149 696 Antisense
TACGGAATGCTCGTTTTTGCTCGCT 24 649 769 Antisense
TACTCGAAGGGGTCACTTATCCGGC 128 645 806 Antisense
GCAACTTTTGCATTCTCAGGATCAT 39 321 883 Antisense
TATTTCGGAACTGTTGTCGCCATGC 13 663 907 Antisense
TGCCACTGTCCGCGTATTTGGGAGA 239 587 929 Antisense
Sequence Source Affymetrix Proprietary Database