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[190281_at] galaptin (S-lectin)

Description W01A11.4 /REP_DB=WormBase Gene ID /WP=CE14396 /TR=Q23065 /GB=AAB04967.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=galaptin (S-lectin)
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 32      4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_highest_nonorm > 15      6grp_total > 22      4grp_total > 60      6grp_highest_sub > 02      6grp_cgc > 61      6grp_high1_sub > 02_03      6grp_cgc_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11044
1 2 3 4 range
A 10426.6
(2.8)
P 		9105
(2.1)
P 		10700.5
(3)
P 		282.9
(-3)
P 		10418
B 8077.2
(1.2)
P 		8858.8
(1.6)
P 		11327
(3)
P 		366.6
(-3)
P 		10960
C 10421.1
(2.8)
P 		9240.8
(2.1)
P 		10755.6
(3)
P 		359.3
(-3)
P 		10396
avr 9641.6
(2.3) 		9068.2
(1.9) 		10927.7
(3) 		336.3
(-3) 		10591

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6596
1 2 3 4 5 6 range
A 5701.5
(0.6)
P 		8130.4
(3)
P 		6346
(1.3)
P 		5411.5
(0.4)
P 		3420.3
(-1.6)
P 		1934.7
(-3)
P 		6196
B 6574.2
(1.3)
P 		8236.6
(2.9)
P 		8321.2
(3)
P 		5042.7
(-0.2)
P 		2931.5
(-2.3)
P 		2173.7
(-3)
P 		6148
C 6558.4
(1.7)
P 		7836.7
(3)
P 		7594.6
(2.8)
P 		4572.4
(-0.2)
P 		3250.6
(-1.5)
P 		1725.5
(-3)
P 		6111
avr 6278
(1.2) 		8067.9
(3) 		7420.6
(2.4) 		5008.9
(0) 		3200.8
(-1.8) 		1944.6
(-3) 		6123
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3755
1 2 3 4 range
A 3796.3
(3)
P 		1976.5
(0.1)
P 		2797.3
(1.4)
P 		41.4
(-3)
P 		3755
B 2575.8
(2.9)
P 		2187.9
(2)
P 		2624.7
(3)
P 		78.1
(-3)
P 		2547
C 3449.7
(2.5)
P 		2656.8
(1.2)
P 		3748.7
(3)
P 		60.6
(-3)
P 		3688
avr 3273.9
(3) 		2273.7
(1.1) 		3056.9
(2.6) 		60
(-3) 		3214

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2421
1 2 3 4 5 6 range
A 1051
(-1.6)
P 		2891.6
(3)
P 		1382
(-0.7)
P 		1372.5
(-0.8)
P 		1032.1
(-1.6)
P 		471
(-3)
P 		2421
B 2287.5
(1.6)
P 		2741.6
(3)
P 		2020.6
(0.8)
P 		1335.7
(-1.4)
P 		1191
(-1.8)
P 		810.5
(-3)
P 		1931
C 2430.9
(3)
P 		2391.2
(2.9)
P 		1932.9
(1.4)
P 		919.5
(-1.9)
P 		1051.8
(-1.5)
P 		577.6
(-3)
P 		1853
avr 1923.1
(0.8) 		2674.8
(3) 		1778.5
(0.4) 		1209.2
(-1.3) 		1091.6
(-1.6) 		619.7
(-3) 		2055
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190281_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11267
Sequence Type Exemplar sequence
Representative Public ID W01A11.4 NCBI
Target Description W01A11.4 /REP_DB=WormBase Gene ID /WP=CE14396 /TR=Q23065 /GB=AAB04967.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=galaptin (S-lectin)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072246(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072246 NCBI Caenorhabditis elegans gaLECtin family member (lec-10) (lec-10) mRNA, complete cds. 11/11 None
SNAP00000000912 ENSEMBL cdna:SNAP chromosome:CEL140:V:6490912:6491605:-1 11/11 None
GENEFINDER00000000921 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6490912:6491605:-1 11/11 None
W01A11.4 ENSEMBL cdna:known chromosome:CEL140:V:6490831:6491712:-1 gene:W01A11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6490911-6491605(-) 100.0 100.0
Public Domain and Genome References
Gene Title galaptin (S-lectin)
Gene Symbol lec-10
Ensembl W01A11.4
Entrez Gene 179034 Entrez gene
SwissProt Q23065 EMBL-EBI
WormBase CE14396 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB04967 Galectin protein 10 [Caenorhabditis elegans] ref|NP_504647.1| gaLECtin family member (lec-10) [Caenorhabditis elegans] dbj|BAB11966.1| galectin LEC-10 [Caenorhabditis elegans] 1.0E-118
blast CAE71889 Hypothetical protein CBG18946 [Caenorhabditis briggsae] 1.0E-110
blast CAA88548 Hypothetical protein R07B1.10 [Caenorhabditis elegans] ref|NP_509649.1| gaLECtin family member (lec-8) [Caenorhabditis elegans] sp|Q09610|LEC8_CAEEL Probable galaptin lec-8 dbj|BAB11964.1| galectin LEC-8 [Caenorhabditis elegans] 1.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 7.6E-44
Sequence
Target Sequence 
>C. ELEGANS:190281_AT
accatctctgttcacggacatgttcgtcacggacatcacaagaactttgccgtcgagctt
ttgagcggaccaaatgttgttcttcatgtcaacttccgtttccatcatgaacacgtcgtt
gtcatgaactcccagttcagtggaatgtggggaccagaaatccgtcacaaaaacccactt
caccactcggagcacttccaccttagcatcaaggttcacgctggatattaccatatctct
gtgaacggtcatcacctcgccgactacccacatcgttacccataccaatcggttcaagcc
atcggattgaagggagacgttcatgttgacaaggttcacttcgaaggattccacttccaa
cgtcgttgggacggacatgtcgatcatggacactctggatacaatgcctatggaactgaa
acctatgttgctccagtgtttgttcagccaaactttatgccatacggagcaccaccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCATCTCTGTTCACGGACATGTTC 425 85 82 Antisense
GGACATGTTCGTCACGGACATCACA 329 525 97 Antisense
GAACTTTGCCGTCGAGCTTTTGAGC 173 351 123 Antisense
ACTTCCGTTTCCATCATGAACACGT 397 103 173 Antisense
TGAACACGTCGTTGTCATGAACTCC 576 573 189 Antisense
ATCTCTGTGAACGGTCATCACCTCG 230 33 316 Antisense
ATACCAATCGGTTCAAGCCATCGGA 134 23 363 Antisense
AGGTTCACTTCGAAGGATTCCACTT 198 57 413 Antisense
GATTCCACTTCCAACGTCGTTGGGA 199 433 428 Antisense
GGACACTCTGGATACAATGCCTATG 648 525 469 Antisense
TTTATGCCATACGGAGCACCACCAC 228 673 535 Antisense
Sequence Source Affymetrix Proprietary Database