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[190279_s_at] GTP-binding protein

Description K02E10.1 /REP_DB=WormBase Gene ID /WP=CE04693 /TR=Q21137 /GB=AAC47067.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=GTP-binding protein
Cluster 6grp_total > 03      4grp_total > 39      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 201.7
(3)
M 		141.1
(-2.1)
A 		130.3
(-3)
A 		194.4
(2.4)
A 		71
B 243.8
(3)
P 		164.9
(-2.4)
A 		198.2
(-0.1)
P 		156.7
(-3)
A 		87
C 218.7
(3)
P 		166
(-2.1)
A 		156.9
(-3)
A 		168.4
(-1.9)
A 		62
avr 221.4
(3) 		157.3
(-3) 		161.8
(-2.6) 		173.2
(-1.5) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 240.5
(3)
A 		206.9
(1.2)
P 		130.8
(-3)
A 		152.8
(-1.8)
P 		162.9
(-1.2)
A 		150.3
(-1.9)
A 		110
B 155.5
(-1)
M 		213.8
(2.7)
P 		188.4
(1.1)
M 		218.2
(3)
P 		123.3
(-3)
A 		141.6
(-1.8)
M 		95
C 202.5
(0)
P 		226.9
(1.3)
P 		202.6
(0)
P 		257.8
(3)
M 		145.7
(-3)
A 		180
(-1.2)
P 		112
avr 199.5
(1.6) 		215.9
(3) 		173.9
(-0.5) 		209.6
(2.5) 		144
(-3) 		157.3
(-1.9) 		72
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 73.4
(3)
M 		30.6
(-2.7)
A 		34.1
(-2.3)
A 		28.5
(-3)
A 		45
B 77.8
(3)
P 		40.7
(-2)
A 		45.9
(-1.3)
P 		33.4
(-3)
A 		44
C 72.4
(3)
P 		47.7
(-0.4)
A 		54.7
(0.6)
A 		28.4
(-3)
A 		44
avr 74.5
(3) 		39.7
(-1.7) 		44.9
(-1) 		30.1
(-3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 44.3
(-0.9)
A 		73.6
(3)
P 		28.5
(-3)
A 		38.7
(-1.6)
P 		49.2
(-0.2)
A 		36.6
(-1.9)
A 		45
B 54.1
(-1)
M 		71.2
(3)
P 		45.7
(-3)
M 		57.8
(-0.2)
P 		50.1
(-2)
A 		52.8
(-1.3)
M 		26
C 75
(3)
P 		69.2
(1.8)
P 		51.6
(-2)
P 		51.8
(-2)
M 		47.1
(-3)
A 		60.3
(-0.2)
P 		28
avr 57.8
(0.2) 		71.3
(3) 		41.9
(-3) 		49.4
(-1.5) 		48.8
(-1.6) 		49.9
(-1.4) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190279_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18198
Sequence Type Exemplar sequence
Representative Public ID K02E10.1 NCBI
Target Description K02E10.1 /REP_DB=WormBase Gene ID /WP=CE04693 /TR=Q21137 /GB=AAC47067.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=GTP-binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076054(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076054 NCBI Caenorhabditis elegans K02E10.1 (K02E10.1) mRNA, complete cds. 11/11 None
GENEFINDER00000017106 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2496999:2500643:1 10/11 None
K02E10.1 ENSEMBL cdna:known chromosome:CEL140:X:2496999:2500927:1 gene:K02E10.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017099 3/11 Cross Hyb Matching Probes None
SNAP00000017100 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2496998-2500643(+) 100.0 100.0
Public Domain and Genome References
Gene Title GTP-binding protein
Ensembl K02E10.1
Entrez Gene 180554 Entrez gene
SwissProt Q21137 EMBL-EBI
WormBase CE04693 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7264 small GTPase mediated signal transduction inferred from electronic annotation QuickGO AmiGO
15031 protein transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC47067 Hypothetical protein K02E10.1 [Caenorhabditis elegans] ref|NP_508455.1| K02E10.1 [Caenorhabditis elegans] 1.0E-153
blast AAC47067 Hypothetical protein K02E10.1 [Caenorhabditis elegans] ref|NP_508455.1| K02E10.1 [Caenorhabditis elegans] 1.0E-130
blast CAE58867 Hypothetical protein CBG02097 [Caenorhabditis briggsae] 1.0E-107
blast CAE58867 Hypothetical protein CBG02097 [Caenorhabditis briggsae] 1.0E-102
blast AAD51133 small GTP-binding protein rab1 [Theileria parva] gb|AAD51132.1| small GTP-binding protein rab1 [Theileria parva] 7.0E-42
blast AAD51133 small GTP-binding protein rab1 [Theileria parva] gb|AAD51132.1| small GTP-binding protein rab1 [Theileria parva] 4.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 1.3E-15
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 6.8E-50
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 2.1E-72
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508455.1 1 91-113
K02E10.1 1 91-113
Sequence
Target Sequence 
>C. ELEGANS:190279_S_AT
gaagacattgtccttcgtttcttactacatatttacttttcctgtttacctagggttttc
gctcctgtatatccgattagaactatgggataccgctggaatggaacggtataggactat
atacaattcttactatcactcagcgcacggagtgatgtgtgtctacgatatgacaaatga
aaaatcgttcgaaaatctggagaaatattggctgaaagagatcaaacaacacgctccacc
aaatgccgtattgatgttagttggcaacaaggcagatatggatcaggaacggaaggttga
cttcgatcgcgctgagaagctggcttcccgactaggagtctcactgtatgaagtgtctgc
aaaaactgggataaactgcgaagaagcatttcacactttgacagctgcaatgagagaacg
aataacggctggcagtatgcattcggatgagtcggatgacaacgaggagttttcatcggc
cttccacgttgacggagtcatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGACATTGTCCTTCGTTTCTTAC 647 337 279 Antisense
ACAATTCTTACTATCACTCAGCGCA 37 115 401 Antisense
AAGAGATCAAACAACACGCTCCACC 232 155 494 Antisense
ACGCTCCACCAAATGCCGTATTGAT 252 91 509 Antisense
ACGGAAGGTTGACTTCGATCGCGCT 66 97 567 Antisense
TCGCGCTGAGAAGCTGGCTTCCCGA 218 599 585 Antisense
CTTCCCGACTAGGAGTCTCACTGTA 370 219 602 Antisense
AGCATTTCACACTTTGACAGCTGCA 286 79 663 Antisense
AACGGCTGGCAGTATGCATTCGGAT 650 143 702 Antisense
CAACGAGGAGTTTTCATCGGCCTTC 47 187 738 Antisense
GCCTTCCACGTTGACGGAGTCATCA 336 281 757 Antisense
Sequence Source Affymetrix Proprietary Database