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[190278_at] somatostatin receptor

Description T01D3.4 /REP_DB=WormBase Gene ID /WP=CE12960 /TR=P90954 /GB=CAB03257.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=somatostatin receptor
Cluster 6grp_total > 53      4grp_total > 12      6grp_cgc > 90      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 27.4
(-1.8)
A 		5.4
(-2.8)
A 		1.5
(-3)
A 		128.2
(3)
A 		127
B 12.9
(-2.2)
A 		6
(-2.8)
A 		4.3
(-3)
A 		67.4
(3)
A 		63
C 39.9
(-0.8)
A 		35.8
(-1)
A 		8.2
(-3)
A 		92.8
(3)
A 		85
avr 26.7
(-1.6) 		15.7
(-2.3) 		4.7
(-3) 		96.1
(3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 6.6
(-2.4)
A 		1
(-3)
A 		55.1
(3)
A 		4.8
(-2.6)
A 		9.9
(-2)
A 		28.3
(0)
A 		54
B 35.3
(2.4)
A 		8.1
(-3)
A 		38.4
(3)
A 		8.8
(-2.9)
A 		20.4
(-0.6)
A 		30.8
(1.5)
A 		30
C 12.5
(-1)
A 		1.1
(-3)
A 		6
(-2.1)
A 		20.5
(0.5)
A 		34.5
(3)
A 		6.9
(-2)
A 		33
avr 18.1
(-0) 		3.4
(-3) 		33.2
(3) 		11.4
(-1.4) 		21.6
(0.7) 		22
(0.7) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 10
(0.1)
A 		1.2
(-2.7)
A 		0.4
(-3)
A 		18.8
(3)
A 		18
B 4.1
(-1.6)
A 		1.5
(-2.8)
A 		1
(-3)
A 		14.4
(3)
A 		13
C 13.2
(1.8)
A 		10.3
(0.5)
A 		2.8
(-3)
A 		15.7
(3)
A 		13
avr 9.1
(0.1) 		4.3
(-1.8) 		1.4
(-3) 		16.3
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.2
(-2.6)
A 		0.4
(-3)
A 		12
(3)
A 		1.2
(-2.6)
A 		3
(-1.7)
A 		6.9
(0.4)
A 		12
B 12.3
(3)
A 		2.7
(-2.8)
A 		9.3
(1.2)
A 		2.3
(-3)
A 		8.3
(0.6)
A 		11.5
(2.5)
A 		10
C 4.6
(-0.6)
A 		0.3
(-3)
A 		1.5
(-2.3)
A 		4.1
(-0.9)
A 		11.2
(3)
A 		2.3
(-1.9)
A 		11
avr 6
(1.5) 		1.1
(-3) 		7.6
(3) 		2.5
(-1.7) 		7.5
(2.9) 		6.9
(2.4) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190278_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14222
Sequence Type Exemplar sequence
Representative Public ID T01D3.4 NCBI
Target Description T01D3.4 /REP_DB=WormBase Gene ID /WP=CE12960 /TR=P90954 /GB=CAB03257.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=somatostatin receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073991(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073991 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-96) (srx-96) mRNA, complete cds. 11/11 None
GENEFINDER00000036028 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13713962:13715592:1 11/11 None
T01D3.4 ENSEMBL cdna:known chromosome:CEL140:V:13713950:13715761:1 gene:T01D3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13713949-13715761(+) 100.0 100.0
Public Domain and Genome References
Gene Title somatostatin receptor
Gene Symbol srx-96
Ensembl T01D3.4
Entrez Gene 187951 Entrez gene
SwissProt P90954 EMBL-EBI
WormBase CE12960 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03257 Hypothetical protein T01D3.4 [Caenorhabditis elegans] ref|NP_506392.1| Serpentine Receptor, class X family member (srx-96) [Caenorhabditis elegans] 1.0E-144
blast CAB03257 Hypothetical protein T01D3.4 [Caenorhabditis elegans] ref|NP_506392.1| Serpentine Receptor, class X family member (srx-96) [Caenorhabditis elegans] 1.0E-124
blast CAB02909 Hypothetical protein F09F3.13 [Caenorhabditis elegans] ref|NP_506437.1| Serpentine Receptor, class X family member (srx-137) [Caenorhabditis elegans] 1.0E-17
blast AAB95042 Serpentine receptor, class x protein 111 [Caenorhabditis elegans] ref|NP_494642.2| Serpentine Receptor, class X family member (srx-111) [Caenorhabditis elegans] 2.0E-17
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506392.1 7 13-35,56-75,95-117,129-148,178-200,221-240,255-277
T01D3.4 7 13-35,56-75,95-117,129-148,178-200,221-240,255-277
GENEFINDER00000036028 7 10-31,52-71,91-113,125-144,174-196,217-236,251-273
Sequence
Target Sequence 
>C. ELEGANS:190278_AT
gtcatctggttttacggcggttacgtatcgagataattgctgggtctattactctatcat
ttctttcaactacgactcagaaaacgataattgcgacaatgttaatctcgatattctcaa
attaatctgtttggttttagccgttttcaacgttgttgtacagattcttaatttgattaa
gatcaaactaatgttttcaaaacaatcaagaacagcttcaagtcaaagacggcgccgtac
attgagacttttcattcaaagcgttattcaagattgcctgtatggtttagatcttttaaa
ttcctgcaatttcttctcagttcacagcgtgcttggccaatttttcatatatacattctc
attgctgttcgtccattctgccgatggacttataatatgccttttccatttcaatgcttc
ctgccgtcgaagaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCATCTGGTTTTACGGCGGTTACG 279 457 432 Antisense
GCTGGGTCTATTACTCTATCATTTC 334 295 470 Antisense
ATCATTTCTTTCAACTACGACTCAG 621 29 487 Antisense
GCTTCAAGTCAAAGACGGCGCCGTA 551 303 646 Antisense
GGCGCCGTACATTGAGACTTTTCAT 220 543 662 Antisense
AATTCCTGCAATTTCTTCTCAGTTC 51 179 730 Antisense
TCAGTTCACAGCGTGCTTGGCCAAT 543 621 748 Antisense
TATATACATTCTCATTGCTGTTCGT 651 661 779 Antisense
GTTCGTCCATTCTGCCGATGGACTT 373 441 798 Antisense
ATATGCCTTTTCCATTTCAATGCTT 67 21 826 Antisense
TCAATGCTTCCTGCCGTCGAAGAAA 563 633 842 Antisense
Sequence Source Affymetrix Proprietary Database