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[190273_at] zinc finger protein

Description F56F11.3 /REP_DB=WormBase Gene ID /WP=CE11280 /TR=Q9TZ64 /GB=AAK21409.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_total > 01      4grp_total > 03      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 246
1 2 3 4 range
A 91.1
(-1.6)
A 		40.1
(-3)
A 		64.4
(-2.3)
A 		262.2
(3)
A 		222
B 104.8
(-2.1)
A 		100.4
(-2.3)
A 		74.6
(-3)
A 		286.5
(3)
M 		212
C 66.7
(-2.9)
A 		63
(-3)
A 		86.6
(-2.3)
A 		253.8
(3)
P 		191
avr 87.5
(-2.4) 		67.8
(-3) 		75.2
(-2.8) 		267.5
(3) 		200

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 119.9
(0.8)
A 		149.9
(2.4)
A 		43.4
(-3)
A 		129.9
(1.3)
A 		108.2
(0.3)
A 		162.8
(3)
A 		119
B 95.3
(1.4)
A 		105
(3)
A 		85.5
(-0.1)
A 		67.7
(-3)
A 		98.2
(1.9)
A 		74.6
(-1.9)
A 		37
C 97.5
(-0.4)
A 		136.1
(2.8)
A 		138.5
(3)
A 		130.5
(2.3)
A 		112
(0.8)
A 		67
(-3)
A 		72
avr 104.2
(-0.8) 		130.3
(3) 		89.1
(-3) 		109.4
(-0) 		106.1
(-0.5) 		101.5
(-1.2) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 33.2
(1.9)
A 		8.7
(-3)
A 		16.8
(-1.4)
A 		38.4
(3)
A 		30
B 33.4
(-0.8)
A 		24.8
(-2)
A 		17.3
(-3)
A 		61
(3)
M 		44
C 22.1
(-2)
A 		18.1
(-3)
A 		30.2
(-0.1)
A 		42.8
(3)
P 		25
avr 29.6
(-0.5) 		17.2
(-3) 		21.4
(-2.2) 		47.4
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 22.1
(-1.3)
A 		53.3
(3)
A 		9.5
(-3)
A 		32.9
(0.2)
A 		32.7
(0.2)
A 		39.6
(1.1)
A 		44
B 33.2
(1.2)
A 		35
(1.7)
A 		20.8
(-2.2)
A 		17.9
(-3)
A 		39.9
(3)
A 		27.8
(-0.3)
A 		22
C 36.2
(1.3)
A 		41.5
(3)
A 		35.2
(1)
A 		26.2
(-1.8)
A 		36.2
(1.3)
A 		22.4
(-3)
A 		19
avr 30.5
(-0.6) 		43.3
(3) 		21.8
(-3) 		25.7
(-1.9) 		36.3
(1) 		29.9
(-0.7) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190273_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6144
Sequence Type Exemplar sequence
Representative Public ID F56F11.3 NCBI
Target Description F56F11.3 /REP_DB=WormBase Gene ID /WP=CE11280 /TR=Q9TZ64 /GB=AAK21409.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065231(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065231 NCBI Caenorhabditis elegans F56F11.3 (F56F11.3) mRNA, complete cds. 11/11 None
SNAP00000006304 ENSEMBL cdna:SNAP chromosome:CEL140:III:2874808:2880414:1 11/11 None
GENEFINDER00000006314 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2874808:2880414:1 11/11 None
F56F11.3.2 ENSEMBL cdna:known chromosome:CEL140:III:2874807:2880414:1 gene:F56F11.3 11/11 None
F56F11.3.1 ENSEMBL cdna:known chromosome:CEL140:III:2874808:2880414:1 gene:F56F11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2874882-2880414(+) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Ensembl F56F11.3
Entrez Gene 175404 Entrez gene
SwissProt Q9TZ64 EMBL-EBI
WormBase CE11280 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK21409 Hypothetical protein F56F11.3 [Caenorhabditis elegans] ref|NP_497632.1| F56F11.3 [Caenorhabditis elegans] 0.0
blast CAE74677 Hypothetical protein CBG22482 [Caenorhabditis briggsae] 1.0E-161
blast CAE74677 Hypothetical protein CBG22482 [Caenorhabditis briggsae] 1.0E-160
blast CAE74677 Hypothetical protein CBG22482 [Caenorhabditis briggsae] 1.0E-123
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.6E-4
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 4.6E-7
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.1E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 4.6E-7
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.1E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.6E-4
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 4.6E-7
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.1E-5
Sequence
Target Sequence 
>C. ELEGANS:190273_AT
tgtgtcatcaacatcagaccttcccagctcagtatccagctctgtgaactccttcgtcta
ccaaaactttgaccccttggagtttaagcgaaaaatagacgaactgacggcttcagcgtg
tctagctgtaatgccagacgcaaatggtcaagtcgatccgatggccatcaaaactcagtt
ggatgctatcaaaaaacaaatggaagagcatcaaacccacatggcagaagcctcgcaaag
actccacgtggactcttccctcgaggattcaaattgcgagccgagcccgagctcatcata
tgatgcttctgaaccatctgtcaagaggcttcaccattgcacacatccgaattgcgggaa
agtctacacgaaaagctcacatttgaaggctcattttagaactcatacaggtgaaaaacc
atacgaatgcagttgggacgggtgtgattggcgatttgctagatctgacgagctaacaag
gcactataggaaacatacaggagaccgcccattca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGTCATCAACATCAGACCTTCCC 331 555 921 Antisense
CAGTATCCAGCTCTGTGAACTCCTT 694 205 950 Antisense
GACGAACTGACGGCTTCAGCGTGTC 179 375 1018 Antisense
TGGTCAAGTCGATCCGATGGCCATC 21 553 1065 Antisense
ATGGCAGAAGCCTCGCAAAGACTCC 220 53 1141 Antisense
GCAAAGACTCCACGTGGACTCTTCC 93 319 1155 Antisense
GACTCTTCCCTCGAGGATTCAAATT 694 371 1171 Antisense
CGAGCCCGAGCTCATCATATGATGC 541 249 1202 Antisense
GAACCATCTGTCAAGAGGCTTCACC 46 347 1231 Antisense
TCACCATTGCACACATCCGAATTGC 515 625 1251 Antisense
AAACATACAGGAGACCGCCCATTCA 69 129 1411 Antisense
Sequence Source Affymetrix Proprietary Database