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[190272_at] monoamine oxidase

Description R13G10.2 /REP_DB=WormBase Gene ID /WP=CE25088 /TR=SW:Q21988 /GB=CAA84671.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=monoamine oxidase
Cluster 6grp_highest_10_10 > 56      6grp_high1_10_10 > 65      4grp_highest_8_8 > 36      4grp_high_8_8 > 0      6grp_highest_nonorm > 72      6grp_total > 65      4grp_total > 07      6grp_cgc > 46      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 235
1 2 3 4 range
A 372.4
(3)
P 		294.1
(-3)
P 		317.4
(-1.2)
P 		318.1
(-1.2)
P 		78
B 387.2
(-0.2)
P 		299.1
(-3)
P 		490.6
(3)
P 		462.7
(2.1)
P 		192
C 513.4
(3)
P 		278.1
(-3)
P 		337.6
(-1.5)
P 		498.6
(2.6)
P 		235
avr 424.3
(2.9) 		290.4
(-3) 		381.9
(1) 		426.5
(3) 		136

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 265
1 2 3 4 5 6 range
A 343
(-2.1)
P 		336.9
(-2.3)
P 		411.7
(0.5)
P 		430.5
(1.2)
P 		318.2
(-3)
P 		478.4
(3)
P 		160
B 396.2
(-1.3)
P 		380
(-1.8)
P 		537
(3)
P 		453.9
(0.5)
P 		341.1
(-3)
P 		421.4
(-0.5)
P 		196
C 357.1
(-0.9)
P 		472
(1.8)
P 		380.3
(-0.4)
P 		365.8
(-0.7)
P 		271.7
(-3)
P 		519.8
(3)
P 		248
avr 365.4
(-1) 		396.3
(0.2) 		443
(1.9) 		416.7
(0.9) 		310.3
(-3) 		473.2
(3) 		163
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 135.6
(3)
P 		63.8
(-1.8)
P 		83
(-0.5)
P 		46.6
(-3)
P 		89
B 123.5
(3)
P 		73.9
(-3)
P 		113.7
(1.8)
P 		98.6
(-0)
P 		50
C 169.9
(3)
P 		79.9
(-3)
P 		117.7
(-0.5)
P 		84.1
(-2.7)
P 		90
avr 143
(3) 		72.5
(-3) 		104.8
(-0.3) 		76.4
(-2.7) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 63.2
(-3)
P 		119.8
(3)
P 		89.7
(-0.2)
P 		109.2
(1.9)
P 		96
(0.5)
P 		116.5
(2.7)
P 		57
B 137.9
(-0.1)
P 		126.5
(-2)
P 		130.4
(-1.3)
P 		120.2
(-3)
P 		138.6
(-0)
P 		157.1
(3)
P 		37
C 132.4
(0.5)
P 		144
(1.2)
P 		96.8
(-1.6)
P 		73.6
(-3)
P 		87.9
(-2.1)
P 		174
(3)
P 		100
avr 111.2
(-1.7) 		130.1
(0.6) 		105.6
(-2.4) 		101
(-3) 		107.5
(-2.2) 		149.2
(3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190272_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7532
Sequence Type Exemplar sequence
Representative Public ID R13G10.2 NCBI
Target Description R13G10.2 /REP_DB=WormBase Gene ID /WP=CE25088 /TR=SW:Q21988 /GB=CAA84671.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=monoamine oxidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065371(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065371 NCBI Caenorhabditis elegans AMine oXidase family member (amx-1) (amx-1) mRNA, complete cds. 11/11 None
GENEFINDER00000032877 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3822408:3826099:1 11/11 None
SNAP00000032875 ENSEMBL cdna:SNAP chromosome:CEL140:III:3822982:3826099:1 11/11 None
R13G10.2 ENSEMBL cdna:known chromosome:CEL140:III:3822381:3826239:1 gene:R13G10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3823008-3826099(+) 100.0 100.0
Public Domain and Genome References
Gene Title monoamine oxidase
Gene Symbol amx-1
Ensembl R13G10.2
Entrez Gene 175493 Entrez gene
SwissProt Q21988 EMBL-EBI
WormBase CE25088 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:258944_AT amine oxidase family protein / SWIRM domain-containing protein at
CHICKEN:GGAAFFX.23979.3.S1_S_AT similar to Hypothetical protein MGC38211 gga
HU35KSUBC:RC_AA243513_AT amine oxidase (flavin containing) domain 1 hs
U133_X3P:HS.237691.0.A1_3P_AT amine oxidase (flavin containing) domain 1 hs
HG-U133_PLUS_2:1553150_AT amine oxidase (flavin containing) domain 1 hs
HG-U133_PLUS_2:227021_AT amine oxidase (flavin containing) domain 1 hs
HG-U133B:227021_AT amine oxidase (flavin containing) domain 1 hs
HG-U95C:61273_S_AT amine oxidase (flavin containing) domain 1 hs
HG-U95C:62487_I_AT amine oxidase (flavin containing) domain 1 hs
HG-U95E:77891_AT amine oxidase (flavin containing) domain 1 hs
MG-U74BV2:113713_AT amine oxidase, flavin containing 1 mm
MOE430B:1433649_AT amine oxidase, flavin containing 1 mm
MOUSE430_2:1433649_AT amine oxidase, flavin containing 1 mm
MOE430B:1443364_AT Amine oxidase, flavin containing 1, mRNA (cDNA clone MGC:38211 IMAGE:5323227) mm
MOUSE430_2:1443364_AT Amine oxidase, flavin containing 1, mRNA (cDNA clone MGC:38211 IMAGE:5323227) mm
MOUSE430_2:1444836_AT Amine oxidase, flavin containing 1, mRNA (cDNA clone MGC:38211 IMAGE:5323227) mm
MOE430B:1444836_AT Amine oxidase, flavin containing 1, mRNA (cDNA clone MGC:38211 IMAGE:5323227) mm
MU19KSUBC:TC41267_AT Amine oxidase, flavin containing 1, mRNA (cDNA clone MGC:38211 IMAGE:5323227) mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA84671 Hypothetical protein R13G10.2 [Caenorhabditis elegans] ref|NP_497772.1| AMine oXidase family member (amx-1) [Caenorhabditis elegans] sp|Q21988|AMX1_CAEEL Amine oxidase family member 0.0
blast CAE72847 Hypothetical protein CBG20142 [Caenorhabditis briggsae] 0.0
blast T24218 hypothetical protein R13G10.2 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002937 EMBL-EBI Amine oxidase 7.0E-92
Pfam IPR002937 EMBL-EBI Amine oxidase 7.0E-92
Pfam IPR002937 EMBL-EBI Amine oxidase 7.0E-92
Sequence
Target Sequence 
>C. ELEGANS:190272_AT
ggctattgatgatctgggcgctggattaattgagaagatcgctgtgaagtttgacagaag
attttgggatactgtagatgctgatggattgcgaacggaatatttcggaaaggtttccga
ttgcaagactgatcgaagtctcttcaatatattctacgacttttctggaaaggaccccaa
tggcgaggacaccttcgtcctaatgtcctatgtcaccgctgaacacgtgaatcttgtcaa
tgtactaacggaatcggaagtcgccgacaaattctgtgcaacccttcggaagatgttccc
atcagctgttattaaccctctaggacatatgatgtcccattggggtgctgatcgattcgt
cggtatgtcgtacacttttgtcccatttggatcggatggtgatgctacgtataatcaact
gaaaaagtcaatcgacgagaagctctactttgcgggagaacatacaattgcagcggaacc
gcagactatggcaggagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTATTGATGATCTGGGCGCTGGA 551 537 1794 Antisense
GAAAGGACCCCAATGGCGAGGACAC 485 359 1961 Antisense
GGACACCTTCGTCCTAATGTCCTAT 369 525 1980 Antisense
TCCTATGTCACCGCTGAACACGTGA 637 591 1999 Antisense
ATTCTGTGCAACCCTTCGGAAGATG 519 9 2064 Antisense
GTTCCCATCAGCTGTTATTAACCCT 543 441 2088 Antisense
CCATTGGGGTGCTGATCGATTCGTC 210 265 2130 Antisense
GATTCGTCGGTATGTCGTACACTTT 685 431 2147 Antisense
CGTACACTTTTGTCCCATTTGGATC 304 247 2162 Antisense
CGACGAGAAGCTCTACTTTGCGGGA 161 251 2226 Antisense
GGAACCGCAGACTATGGCAGGAGCC 200 531 2268 Antisense
Sequence Source Affymetrix Proprietary Database