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[190271_at]

Description K11D12.1 /REP_DB=WormBase Gene ID /WP=CE12126 /TR=O44626 /GB=AAB94223.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_total > 06      4grp_total > 46      6grp_cgc > 21      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 371
1 2 3 4 range
A 337.8
(3)
P 		153.3
(-1)
P 		61.3
(-3)
A 		63.2
(-3)
A 		277
B 350.8
(3)
P 		181.3
(0.1)
P 		65.3
(-1.9)
A 		4.5
(-3)
A 		346
C 375.7
(3)
P 		138.1
(-1.6)
A 		109.8
(-2.1)
P 		65.8
(-3)
A 		310
avr 354.8
(3) 		157.6
(-0.8) 		78.8
(-2.3) 		44.5
(-3) 		310

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 357
1 2 3 4 5 6 range
A 367.3
(3)
P 		161.5
(-1)
P 		148
(-1.2)
P 		127.6
(-1.6)
P 		55
(-3)
A 		55.7
(-3)
A 		312
B 380.7
(3)
P 		222.6
(0.3)
P 		178.6
(-0.5)
P 		89.9
(-2.1)
A 		72.8
(-2.4)
A 		35.6
(-3)
A 		345
C 279.2
(3)
P 		238.9
(2.1)
P 		169.5
(0.4)
P 		116.2
(-0.8)
P 		39.2
(-2.6)
A 		23.7
(-3)
A 		256
avr 342.4
(3) 		207.7
(0.3) 		165.4
(-0.5) 		111.2
(-1.6) 		55.7
(-2.7) 		38.3
(-3) 		304
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 123
(3)
P 		33.3
(-1.7)
P 		16
(-2.6)
A 		9.2
(-3)
A 		114
B 111.9
(3)
P 		44.8
(-0.6)
P 		15.1
(-2.2)
A 		1
(-3)
A 		111
C 124.4
(3)
P 		39.7
(-1.5)
A 		38.3
(-1.6)
P 		11.1
(-3)
A 		113
avr 119.8
(3) 		39.3
(-1.3) 		23.1
(-2.1) 		7.1
(-3) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 67.7
(3)
P 		57.4
(1.9)
P 		32.2
(-0.9)
P 		32.4
(-0.9)
P 		16.6
(-2.7)
A 		13.6
(-3)
A 		54
B 132.5
(3)
P 		74.1
(0.1)
P 		43.4
(-1.5)
P 		23.8
(-2.5)
A 		29.6
(-2.2)
A 		13.3
(-3)
A 		119
C 103.5
(3)
P 		72.9
(1.1)
P 		43.1
(-0.8)
P 		23.4
(-2)
P 		12.7
(-2.7)
A 		7.9
(-3)
A 		96
avr 101.2
(3) 		68.1
(0.8) 		39.6
(-1.1) 		26.5
(-2) 		19.6
(-2.5) 		11.6
(-3) 		90
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190271_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14900
Sequence Type Exemplar sequence
Representative Public ID K11D12.1 NCBI
Target Description K11D12.1 /REP_DB=WormBase Gene ID /WP=CE12126 /TR=O44626 /GB=AAB94223.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071955(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071955 NCBI Caenorhabditis elegans Coexpressed With Polycystins family member (cwp-4) (cwp-4) mRNA, complete cds. 11/11 None
SNAP00000023431 ENSEMBL cdna:SNAP chromosome:CEL140:V:5054720:5056158:1 11/11 None
GENEFINDER00000023435 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5052086:5056158:1 11/11 None
K11D12.1 ENSEMBL cdna:known chromosome:CEL140:V:5053432:5056242:1 gene:K11D12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5052694-5056158(+) 88.24 100.0
Public Domain and Genome References
Gene Title
Gene Symbol cwp-4
Ensembl K11D12.1
Entrez Gene 178894 Entrez gene
SwissProt O44626 EMBL-EBI
WormBase CE30382 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T32661 hypothetical protein K11D12.1 - Caenorhabditis elegans 0.0
blast NP_504356 Coexpressed With Polycystins family member (cwp-4) [Caenorhabditis elegans] gb|AAM15587.1| Coexpressed with polycystins protein 4 [Caenorhabditis elegans] 1.0E-122
blast T32661 hypothetical protein K11D12.1 - Caenorhabditis elegans 1.0E-122
blast NP_741535 K11D12.12 [Caenorhabditis elegans] gb|AAM15590.1| Hypothetical protein K11D12.12 [Caenorhabditis elegans] 1.0E-111
blast CAE64060 Hypothetical protein CBG08662 [Caenorhabditis briggsae] 6.0E-72
blast NP_504356 Coexpressed With Polycystins family member (cwp-4) [Caenorhabditis elegans] gb|AAM15587.1| Coexpressed with polycystins protein 4 [Caenorhabditis elegans] 3.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 7.8E-5
Sequence
Target Sequence 
>C. ELEGANS:190271_AT
tacaactacagtaccgcttaacggaactacaacaactgtaccaacaaatgaaaccactac
aacatcaccattgaatggaactactacaactacagtacccattaatggagcaactacaac
tattccatcaaatggaaacatcacttctactactactactgtaccatcaactaatacgac
gaccacagccgtaaattcaaattcaacaacaactaccgtctcaccggacgacgattataa
tggatctggagaacaaccgggaaattcggatgacaatggagacaagaaaggttggtggca
cgattggaaatggccaataattgttgctgggtgcttagcaggtgcatctatcgttctatc
aattattgcatgcctaacttgttgcttcatcggaagtgctacggtagctgcaaaaccata
cagtcctcctccaatttacacatctccatctccaccggaacttcctccaaatcccgttga
agctccatcaataactccattta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACAACTACAGTACCGCTTAACGGA 183 641 1161 Antisense
GAAACCACTACAACATCACCATTGA 439 359 1210 Antisense
GGAAACATCACTTCTACTACTACTA 23 529 1294 Antisense
TCAACTAATACGACGACCACAGCCG 309 631 1327 Antisense
TACCGTCTCACCGGACGACGATTAT 666 647 1374 Antisense
GCTGGGTGCTTAGCAGGTGCATCTA 670 293 1486 Antisense
GGTGCATCTATCGTTCTATCAATTA 409 501 1501 Antisense
GCATGCCTAACTTGTTGCTTCATCG 123 311 1528 Antisense
AGCTGCAAAACCATACAGTCCTCCT 538 77 1566 Antisense
ACTTCCTCCAAATCCCGTTGAAGCT 322 95 1620 Antisense
GAAGCTCCATCAATAACTCCATTTA 443 343 1639 Antisense
Sequence Source Affymetrix Proprietary Database