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[190269_s_at] Lectin C-type domain

Description C49C3.12 /REP_DB=WormBase Gene ID /WP=CE19751 /TR=Q9XUG1 /GB=CAB05157.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Lectin C-type domain
Cluster 6grp_total > 42      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 8.2
(-2.6)
A 		25.9
(2)
A 		6.7
(-3)
A 		29.8
(3)
A 		23
B 40.9
(3)
A 		11.2
(-3)
A 		19.9
(-1.2)
A 		19.4
(-1.3)
A 		30
C 18
(-3)
A 		36.4
(-0.7)
A 		21.3
(-2.6)
A 		65.3
(3)
A 		47
avr 22.4
(-1.3) 		24.5
(-0.7) 		16
(-3) 		38.2
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 18.5
(-1.9)
A 		8.2
(-3)
A 		63.9
(3)
A 		24.8
(-1.2)
A 		32.5
(-0.4)
A 		15.3
(-2.2)
A 		56
B 38.1
(3)
A 		16.1
(-0.8)
A 		7.4
(-2.3)
A 		28.9
(1.4)
A 		23
(0.4)
A 		3.1
(-3)
A 		35
C 5.5
(-1)
A 		3.2
(-2.9)
A 		10.3
(3)
A 		7.8
(0.9)
A 		3.1
(-3)
A 		5
(-1.4)
A 		7
avr 20.7
(1) 		9.2
(-2.6) 		27.2
(3) 		20.5
(0.9) 		19.5
(0.6) 		7.8
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3
(-1.1)
A 		5.6
(3)
A 		1.8
(-3)
A 		4.4
(1.1)
A 		4
B 13.1
(3)
A 		2.8
(-3)
A 		4.6
(-2)
A 		4.1
(-2.2)
A 		10
C 5.9
(-3)
A 		10.5
(2.4)
A 		7.4
(-1.2)
A 		11
(3)
A 		5
avr 7.3
(3) 		6.3
(0.8) 		4.6
(-3) 		6.5
(1.2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 3.4
(-2.7)
A 		2.9
(-3)
A 		13.9
(3)
A 		6.3
(-1.1)
A 		9.8
(0.8)
A 		3.7
(-2.6)
A 		11
B 13.3
(3)
A 		5.4
(-0.9)
A 		1.8
(-2.7)
A 		7.7
(0.2)
A 		9.3
(1)
A 		1.1
(-3)
A 		12
C 2
(0.8)
A 		1
(-3)
A 		2.6
(3)
A 		1.6
(-0.8)
A 		1
(-3)
A 		1.7
(-0.4)
A 		2
avr 6.2
(2.3) 		3.1
(-1.8) 		6.1
(2.2) 		5.2
(1) 		6.7
(3) 		2.2
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190269_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8603
Sequence Type Exemplar sequence
Representative Public ID C49C3.12 NCBI
Target Description C49C3.12 /REP_DB=WormBase Gene ID /WP=CE19751 /TR=Q9XUG1 /GB=CAB05157.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Lectin C-type domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070689(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070689 NCBI Caenorhabditis elegans C49C3.12 (C49C3.12) mRNA, complete cds. 11/11 None
SNAP00000040202 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17345553:17346680:-1 11/11 None
GENEFINDER00000040205 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17345553:17346584:-1 11/11 None
C49C3.12 ENSEMBL cdna:known chromosome:CEL140:IV:17345523:17346650:-1 gene:C49C3.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17345558-17346590(-) 100.0 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain
Ensembl C49C3.12
Entrez Gene 178521 Entrez gene
SwissProt Q9XUG1 EMBL-EBI
WormBase CE19751 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05157 Hypothetical protein C49C3.12 [Caenorhabditis elegans] ref|NP_503090.1| C49C3.12 [Caenorhabditis elegans] 1.0E-120
blast CAB05157 Hypothetical protein C49C3.12 [Caenorhabditis elegans] ref|NP_503090.1| C49C3.12 [Caenorhabditis elegans] 1.0E-119
blast CAE57433 Hypothetical protein CBG00394 [Caenorhabditis briggsae] 1.0E-70
blast CAE57433 Hypothetical protein CBG00394 [Caenorhabditis briggsae] 2.0E-66
blast CAE57432 Hypothetical protein CBG00393 [Caenorhabditis briggsae] 1.0E-21
blast CAE57432 Hypothetical protein CBG00393 [Caenorhabditis briggsae] 2.0E-21
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000040202 1 20-37
Sequence
Target Sequence 
>C. ELEGANS:190269_S_AT
ggtgcagagttcaagtgcccaccgaacttccacaaatcgaatagagttaatggagtatgg
tgcatcaaggtttacccaggaaacatgacttggtgggaggctgaacgtgaatgccgatgt
accatcaaaggtggtcatctgtcaggaattgagagtaactccgagaagagatatgtggaa
gaacaaacgttgagcattcttgacgataaaaacatcaagaatggagcagtttggcttgga
gcctatagacgcaaggaatgcccatcaggaaaagtatcatccgacagcatttgccacgac
gagaaaaccttccagttcacagaccagcatacatgcaagactctcatcttccaggactgg
gctgccaatcagccgaccaacaatgccggagacgactgcgcagttttacttgcatccacc
gaagcttctggatcaaacagtgaagcatctggaaaggcagctgtcaaaaactgccttcat
gttcaaggaacaactccaattctctcatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGCAGAGTTCAAGTGCCCACCGA 49 501 43 Antisense
GCTGAACGTGAATGCCGATGTACCA 679 293 142 Antisense
AAGTATCATCCGACAGCATTTGCCA 180 157 314 Antisense
TTTGCCACGACGAGAAAACCTTCCA 171 631 332 Antisense
TTCCAGTTCACAGACCAGCATACAT 11 701 352 Antisense
TACATGCAAGACTCTCATCTTCCAG 395 643 372 Antisense
CTTCCAGGACTGGGCTGCCAATCAG 457 217 390 Antisense
CCAATCAGCCGACCAACAATGCCGG 462 277 407 Antisense
ACAATGCCGGAGACGACTGCGCAGT 584 113 422 Antisense
GACTGCGCAGTTTTACTTGCATCCA 304 375 436 Antisense
AGGAACAACTCCAATTCTCTCATCC 484 55 528 Antisense
Sequence Source Affymetrix Proprietary Database