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[190268_at] zinc finger protein

Description T24A6.11 /REP_DB=WormBase Gene ID /WP=CE19591 /TR=O61942 /GB=AAC17798.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_total > 33      4grp_total > 21      6grp_cgc > 80      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 57
(-3)
A 		81.8
(-0.1)
A 		59.8
(-2.7)
A 		108.7
(3)
A 		52
B 69.7
(1.5)
A 		42.4
(-0.6)
A 		12.2
(-3)
A 		88.8
(3)
A 		77
C 108.3
(3)
A 		48.5
(-3)
A 		48.8
(-3)
A 		88.1
(1)
A 		60
avr 78.3
(1.2) 		57.6
(-1.1) 		40.3
(-3) 		95.2
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 105.6
(1.7)
A 		28.3
(-2.2)
A 		116.4
(2.3)
P 		12.2
(-3)
A 		130.4
(3)
A 		36.9
(-1.7)
A 		118
B 127.4
(3)
P 		76.6
(-0.7)
P 		115.9
(2.2)
P 		44.8
(-3)
A 		51.6
(-2.5)
A 		48.3
(-2.7)
A 		83
C 79.5
(-1.1)
P 		81.7
(-0.9)
A 		49.4
(-3)
A 		142.5
(3)
A 		61.1
(-2.2)
A 		89.3
(-0.4)
A 		93
avr 104.2
(3) 		62.2
(-2.5) 		93.9
(1.7) 		66.5
(-1.9) 		81
(-0) 		58.2
(-3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 20.8
(3)
A 		17.8
(-0.5)
A 		15.6
(-3)
A 		15.9
(-2.7)
A 		5
B 22.2
(3)
A 		10.5
(-0.6)
A 		2.8
(-3)
A 		18.9
(2)
A 		19
C 35.8
(3)
A 		13.9
(-3)
A 		17
(-2.2)
A 		14.9
(-2.7)
A 		22
avr 26.3
(3) 		14.1
(-2) 		11.8
(-3) 		16.6
(-1) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 19.5
(-0.3)
A 		10.1
(-1.8)
A 		25.3
(0.7)
P 		3.1
(-3)
A 		39.3
(3)
A 		9
(-2)
A 		36
B 44.3
(3)
P 		25.5
(-0.5)
P 		28.1
(0)
P 		11.9
(-3)
A 		20.9
(-1.3)
A 		18
(-1.9)
A 		32
C 29.5
(2.9)
P 		24.9
(1.3)
A 		12.6
(-3)
A 		28.6
(2.5)
A 		19.8
(-0.5)
A 		29.9
(3)
A 		17
avr 31.1
(3) 		20.2
(-0.9) 		22
(-0.3) 		14.5
(-3) 		26.7
(1.4) 		19
(-1.4) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190268_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14919
Sequence Type Exemplar sequence
Representative Public ID T24A6.11 NCBI
Target Description T24A6.11 /REP_DB=WormBase Gene ID /WP=CE19591 /TR=O61942 /GB=AAC17798.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071589(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071589 NCBI Caenorhabditis elegans T24A6.11 (T24A6.11) mRNA, complete cds. 11/11 None
GENEFINDER00000027437 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3541468:3544270:-1 10/11 None
T24A6.11 ENSEMBL cdna:known chromosome:CEL140:V:3541468:3543270:-1 gene:T24A6.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027424 3/11 Cross Hyb Matching Probes None
SNAP00000027425 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3541467-3543270(-) 98.89 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Gene Symbol nhr-222
Ensembl T24A6.11
Entrez Gene 188828 Entrez gene
SwissProt O61942 EMBL-EBI
WormBase CE19591 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC17798 Hypothetical protein T24A6.11 [Caenorhabditis elegans] ref|NP_503990.1| T24A6.11 [Caenorhabditis elegans] 0.0
blast AAC17798 Hypothetical protein T24A6.11 [Caenorhabditis elegans] ref|NP_503990.1| T24A6.11 [Caenorhabditis elegans] 1.0E-178
blast CAE58241 Hypothetical protein CBG01341 [Caenorhabditis briggsae] 1.0E-106
blast CAE58241 Hypothetical protein CBG01341 [Caenorhabditis briggsae] 1.0E-98
blast AAB52274 Hypothetical protein F47C10.4 [Caenorhabditis elegans] ref|NP_504066.1| F47C10.4 [Caenorhabditis elegans] 3.0E-72
blast AAB52274 Hypothetical protein F47C10.4 [Caenorhabditis elegans] ref|NP_504066.1| F47C10.4 [Caenorhabditis elegans] 1.0E-69
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 1.0E-43
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 5.5E-12
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 1.0E-43
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 2.4E-24
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 6.4E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000027437 3 2-19,34-56,69-88
Sequence
Target Sequence 
>C. ELEGANS:190268_AT
tacagtttttcagagttccgcctatgatatgtcggacgctgattggaggtttttcacgat
gtacacaacgatagaattcctgctcaacttggatttcatggaaaaattggagcattcgga
taagatggttctgctgcaaaatttctctgcaaaagccacactgctattcaactcactgag
aactgtacgcgggaataatgaccgtttgaccactccaggaggccatgaaatagtaccaga
tcttatgagcacactgttcaacgtgtcgctgagctttattcgccaaatacgcagccgagt
agttagcaagctcatagagctcgagatcaccgatgaggagttcctcctggttacggttat
acttttttgcgacccagccatatccgggctatcatcacatgctatatcgatcctaacccc
cttaagaatatgctacacatcttgcctctttcaacattgccaaataacttgccaaaaaaa
cttcccaaccaaatttgtggatctcctctcgctaagtcatgttgtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACAGTTTTTCAGAGTTCCGCCTAT 99 643 471 Antisense
AACGATAGAATTCCTGCTCAACTTG 461 143 537 Antisense
AAAGCCACACTGCTATTCAACTCAC 381 125 622 Antisense
GAATAATGACCGTTTGACCACTCCA 389 325 663 Antisense
GAGCACACTGTTCAACGTGTCGCTG 525 389 717 Antisense
TCACATGCTATATCGATCCTAACCC 102 629 865 Antisense
GATCCTAACCCCCTTAAGAATATGC 273 297 879 Antisense
AGAATATGCTACACATCTTGCCTCT 704 75 895 Antisense
TCTTGCCTCTTTCAACATTGCCAAA 107 619 910 Antisense
ACCAAATTTGTGGATCTCCTCTCGC 350 85 958 Antisense
CTCCTCTCGCTAAGTCATGTTGTGA 442 235 973 Antisense
Sequence Source Affymetrix Proprietary Database