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[190267_s_at] reverse transcriptase

Description R03G8.2 /REP_DB=WormBase Gene ID /WP=CE03526 /TR=Q21670 /GB=CAA93677.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=reverse transcriptase
Cluster 6grp_total > 41      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 189
1 2 3 4 range
A 36.8
(-3)
A 		38.1
(-2.9)
A 		59.1
(-1.5)
A 		125.2
(3)
A 		88
B 108.6
(3)
A 		48.2
(-3)
A 		94.5
(1.6)
P 		92.8
(1.4)
A 		60
C 87.9
(-0.8)
A 		20.1
(-3)
A 		27.2
(-2.8)
A 		208.8
(3)
M 		189
avr 77.8
(-0.6) 		35.5
(-3) 		60.3
(-1.6) 		142.3
(3) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 61.1
(0.3)
A 		57.3
(-0.1)
A 		89.1
(3)
A 		50.2
(-0.8)
A 		45.7
(-1.2)
A 		27.7
(-3)
A 		61
B 53.1
(0.5)
A 		40.2
(-1.5)
A 		67.4
(2.8)
A 		68.5
(3)
A 		64.4
(2.3)
A 		31.1
(-3)
A 		37
C 51.2
(-0.9)
M 		93.1
(3)
P 		50.7
(-1)
A 		84.9
(2.2)
A 		45.9
(-1.4)
A 		29.3
(-3)
A 		64
avr 55.1
(0.9) 		63.5
(2.2) 		69.1
(3) 		67.9
(2.8) 		52
(0.4) 		29.4
(-3) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 13.4
(0.1)
A 		8.3
(-3)
A 		15.4
(1.3)
A 		18.3
(3)
A 		10
B 34.6
(3)
A 		11.9
(-3)
A 		21.9
(-0.4)
P 		19.8
(-0.9)
A 		23
C 29.1
(1.8)
A 		5.8
(-3)
A 		9.5
(-2.2)
A 		35.2
(3)
M 		29
avr 25.7
(3) 		8.7
(-3) 		15.6
(-0.6) 		24.4
(2.5) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 11.3
(-1)
A 		20.4
(3)
A 		19.4
(2.6)
A 		12.7
(-0.4)
A 		13.8
(0.1)
A 		6.7
(-3)
A 		14
B 18.5
(-0.2)
A 		13.4
(-2.3)
A 		16.4
(-1)
A 		18.1
(-0.3)
A 		26.2
(3)
A 		11.6
(-3)
A 		15
C 19
(-0)
M 		28.4
(3)
P 		12.9
(-2)
A 		17.1
(-0.6)
A 		14.9
(-1.4)
A 		9.8
(-3)
A 		19
avr 16.3
(0.7) 		20.7
(3) 		16.2
(0.6) 		16
(0.5) 		18.3
(1.7) 		9.4
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190267_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17633
Sequence Type Exemplar sequence
Representative Public ID R03G8.2 NCBI
Target Description R03G8.2 /REP_DB=WormBase Gene ID /WP=CE03526 /TR=Q21670 /GB=CAA93677.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=reverse transcriptase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077772(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077772 NCBI Caenorhabditis elegans R03G8.2 (R03G8.2) mRNA, complete cds. 11/11 None
ZK666.9 ENSEMBL cdna:pseudogene chromosome:CEL140:II:10493267:10493974:-1 gene:ZK666.9 11/11 None
R03G8.2 ENSEMBL cdna:known chromosome:CEL140:X:13087712:13088241:1 gene:R03G8.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
C53C7.4 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13087711-13088241(+) 100.0 100.0
Public Domain and Genome References
Gene Title reverse transcriptase
Ensembl ZK666.9
R03G8.2
Entrez Gene 187545 Entrez gene
SwissProt Q21670 EMBL-EBI
WormBase CE03526 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6278 RNA-dependent DNA replication inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3723 RNA binding inferred from electronic annotation QuickGO AmiGO
3964 RNA-directed DNA polymerase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93677 Hypothetical protein R03G8.2 [Caenorhabditis elegans] ref|NP_510173.1| R03G8.2 [Caenorhabditis elegans] 8.0E-57
blast T20051 hypothetical protein C49A1.8 - Caenorhabditis elegans 3.0E-44
blast T21231 hypothetical protein F22B3.3 - Caenorhabditis elegans 1.0E-43
Sequence
Target Sequence 
>C. ELEGANS:190267_S_AT
cacaaacacacaatgctttctccaaatcctacgaaaaccgactaaaaattctaggaattt
catcagcccgctctctccgcctaagagcccaactattgcttctatacaaaattcttaccg
gcgcagcgcacttcccaaaaagcagtaactttgttacgcttgctaactcgtctcgtcgtc
cgatgctcattaaaattaaaaatcccaaatgtcgtagctttttctcccaagtagtaccaa
tatggaatagcattgtacgcaactctagctttttcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACAAACACACAATGCTTTCTCCAA 386 195 98 Antisense
AATGCTTTCTCCAAATCCTACGAAA 29 161 109 Antisense
TCTCCAAATCCTACGAAAACCGACT 68 607 116 Antisense
ATTCTAGGAATTTCATCAGCCCGCT 185 11 145 Antisense
TCCGCCTAAGAGCCCAACTATTGCT 207 595 173 Antisense
GCCTAAGAGCCCAACTATTGCTTCT 235 283 176 Antisense
GCTTCTATACAAAATTCTTACCGGC 113 305 195 Antisense
TATACAAAATTCTTACCGGCGCAGC 383 659 200 Antisense
ACTTTGTTACGCTTGCTAACTCGTC 13 103 245 Antisense
TCTCGTCGTCCGATGCTCATTAAAA 549 609 268 Antisense
TTGTACGCAACTCTAGCTTTTTCCT 51 705 350 Antisense
Sequence Source Affymetrix Proprietary Database