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[190266_at] Lectin C-type domain

Description C49C3.13 /REP_DB=WormBase Gene ID /WP=CE19752 /TR=Q9XUF4 /GB=CAB05164.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Lectin C-type domain
Cluster 6grp_total > 25      4grp_total > 55      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 206
1 2 3 4 range
A 220.1
(3)
P 		78.1
(-2.6)
A 		140.8
(-0.1)
P 		68.2
(-3)
A 		152
B 201.6
(3)
P 		94.7
(-0.4)
A 		87.1
(-0.7)
A 		14.1
(-3)
A 		188
C 175.4
(3)
P 		90.7
(-2.3)
P 		80.3
(-3)
A 		112.4
(-1)
A 		95
avr 199
(3) 		87.8
(-2) 		102.7
(-1.3) 		64.9
(-3) 		134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 103.8
(1.9)
P 		125
(3)
M 		80.7
(0.8)
A 		22
(-2.2)
A 		5.5
(-3)
A 		25.7
(-2)
A 		120
B 119.5
(3)
P 		97.2
(1.5)
P 		64.6
(-0.8)
A 		32.6
(-3)
A 		33.8
(-2.9)
A 		32.7
(-3)
A 		87
C 103.9
(2.5)
P 		111.3
(3)
P 		73.3
(0.5)
A 		48.9
(-1.1)
A 		19.3
(-3)
A 		30.9
(-2.2)
A 		92
avr 109.1
(2.9) 		111.2
(3) 		72.9
(0.5) 		34.5
(-2) 		19.5
(-3) 		29.8
(-2.3) 		92
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 80.2
(3)
P 		17
(-2.4)
A 		36.8
(-0.7)
P 		10
(-3)
A 		70
B 64.3
(3)
P 		23.4
(-1)
A 		20.2
(-1.3)
A 		3
(-3)
A 		61
C 58.1
(3)
P 		26.1
(-1.9)
P 		28
(-1.6)
A 		18.9
(-3)
A 		39
avr 67.5
(3) 		22.2
(-1.8) 		28.3
(-1.1) 		10.6
(-3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 19.1
(-0.6)
P 		44.4
(3)
M 		17.6
(-0.8)
A 		5.6
(-2.5)
A 		1.7
(-3)
A 		6.2
(-2.4)
A 		43
B 41.6
(3)
P 		32.4
(1.3)
P 		15.7
(-1.7)
A 		8.6
(-3)
A 		13.8
(-2.1)
A 		12.2
(-2.3)
A 		33
C 38.5
(3)
P 		34
(2.2)
P 		18.6
(-0.7)
A 		9.8
(-2.3)
A 		6.2
(-3)
A 		10.3
(-2.2)
A 		32
avr 33.1
(2.2) 		36.9
(3) 		17.3
(-1) 		8
(-2.8) 		7.2
(-3) 		9.6
(-2.5) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190266_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8792
Sequence Type Exemplar sequence
Representative Public ID C49C3.13 NCBI
Target Description C49C3.13 /REP_DB=WormBase Gene ID /WP=CE19752 /TR=Q9XUF4 /GB=CAB05164.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Lectin C-type domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070690(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070690 NCBI Caenorhabditis elegans C49C3.13 (C49C3.13) mRNA, complete cds. 11/11 A 
SNAP00000040203 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17348276:17349046:1 11/11 None
C49C3.13 ENSEMBL cdna:known chromosome:CEL140:IV:17347136:17351031:1 gene:C49C3.13 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17347141-17349923(+) 100.0 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain
Ensembl C49C3.13
Entrez Gene 183598 Entrez gene
SwissProt Q9XUF4 EMBL-EBI
WormBase CE32834 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05164 Hypothetical protein C49C3.13 [Caenorhabditis elegans] ref|NP_503091.2| C49C3.13 [Caenorhabditis elegans] 0.0
blast CAE57434 Hypothetical protein CBG00395 [Caenorhabditis briggsae] 1.0E-98
blast CAB05164 Hypothetical protein C49C3.13 [Caenorhabditis elegans] ref|NP_503091.2| C49C3.13 [Caenorhabditis elegans] 5.0E-52
blast CAE57435 Hypothetical protein CBG00396 [Caenorhabditis briggsae] 2.0E-51
blast CAE57434 Hypothetical protein CBG00395 [Caenorhabditis briggsae] 2.0E-49
blast CAB02809 Hypothetical protein C30H6.4 [Caenorhabditis elegans] ref|NP_503095.1| C30H6.4 [Caenorhabditis elegans] 1.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 6.1E-5
Sequence
Target Sequence 
>C. ELEGANS:190266_AT
gattgcagcgacttatgtgtccacggggtggtttccatatatggacaattggctaggcct
cagaagaagttgcgataatagtacgtatatttggactgatggaacaccagtcgactactt
gtggtggcaacctggttatcctggatcaggggacccagaaaaaagttgtgtcactatttg
ggtcacttctttgttgaaacttaatccgggctacgtgcaaggacagttcgacgacatttg
ggattgtggaaccaatctggctacacctacttgtcgttatgaccccacgtcaactgcgcc
ccatattaaatacgatacgagttacacatgtgcgtcgacaactac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTGCAGCGACTTATGTGTCCACG 577 433 417 Antisense
GTCCACGGGGTGGTTTCCATATATG 345 477 435 Antisense
AGTCGACTACTTGTGGTGGCAACCT 230 61 525 Antisense
TGGCAACCTGGTTATCCTGGATCAG 607 545 541 Antisense
GTCACTATTTGGGTCACTTCTTTGT 449 465 586 Antisense
GAAACTTAATCCGGGCTACGTGCAA 379 353 612 Antisense
GTGCAAGGACAGTTCGACGACATTT 308 481 631 Antisense
GTGGAACCAATCTGGCTACACCTAC 228 485 662 Antisense
TACACCTACTTGTCGTTATGACCCC 265 641 678 Antisense
GTCAACTGCGCCCCATATTAAATAC 196 465 705 Antisense
GTTACACATGTGCGTCGACAACTAC 191 447 737 Antisense
Sequence Source Affymetrix Proprietary Database