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[190262_at] GTP-binding protein

Description F57C12.2 /REP_DB=WormBase Gene ID /WP=CE28471 /TR=Q20940 /GB=AAA83296.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=GTP-binding protein
Cluster 6grp_total > 83      4grp_total > 21      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.2
(-2.3)
A 		2.1
(-3)
A 		2.7
(1.5)
A 		2.9
(3)
A 		1
B 6.1
(3)
A 		2.8
(-1.6)
A 		1.8
(-3)
A 		2.9
(-1.5)
A 		4
C 5
(-2.2)
A 		6.4
(-0.8)
A 		4.2
(-3)
A 		10.3
(3)
A 		6
avr 4.4
(0.6) 		3.8
(-0.8) 		2.9
(-3) 		5.4
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 5.4
(-1.9)
A 		9.8
(-0.3)
A 		18.6
(3)
A 		2.4
(-3)
A 		4.3
(-2.3)
A 		6.6
(-1.4)
A 		16
B 2.7
(-3)
A 		5.5
(-1.5)
A 		3.8
(-2.4)
A 		9.4
(0.6)
A 		9.9
(0.8)
A 		14
(3)
A 		11
C 1.6
(-3)
A 		4.6
(-1.5)
A 		3.5
(-2.1)
A 		2.2
(-2.7)
A 		13.6
(3)
A 		2.4
(-2.6)
A 		12
avr 3.2
(-3) 		6.6
(0.3) 		8.6
(2.3) 		4.7
(-1.5) 		9.3
(3) 		7.7
(1.4) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 0.8
(3)
A 		0.5
(-1.5)
A 		0.7
(1.5)
A 		0.4
(-3)
A 		0
B 1.9
(3)
A 		0.7
(-1.8)
A 		0.4
(-3)
A 		0.6
(-2.2)
A 		2
C 1.7
(1)
A 		1.8
(3)
A 		1.5
(-3)
A 		1.7
(1)
A 		0
avr 1.5
(3) 		1
(-2) 		0.9
(-3) 		0.9
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 1
(-2.3)
A 		3.5
(2)
A 		4.1
(3)
A 		0.6
(-3)
A 		1.3
(-1.8)
A 		1.6
(-1.3)
A 		4
B 0.9
(-3)
A 		1.8
(-1.7)
A 		0.9
(-3)
A 		2.5
(-0.8)
A 		4
(1.3)
A 		5.2
(3)
A 		4
C 0.6
(-2.7)
A 		1.4
(-1.5)
A 		0.9
(-2.3)
A 		0.4
(-3)
A 		4.4
(3)
A 		0.8
(-2.4)
A 		4
avr 0.8
(-3) 		2.2
(0.5) 		2
(-0) 		1.2
(-2) 		3.2
(3) 		2.5
(1.3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190262_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18615
Sequence Type Exemplar sequence
Representative Public ID F57C12.2 NCBI
Target Description F57C12.2 /REP_DB=WormBase Gene ID /WP=CE28471 /TR=Q20940 /GB=AAA83296.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=GTP-binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075717(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075717 NCBI Caenorhabditis elegans F57C12.2 (F57C12.2) mRNA, complete cds. 11/11 None
SNAP00000008047 ENSEMBL cdna:SNAP chromosome:CEL140:X:545483:547538:-1 9/11 None
GENEFINDER00000008056 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:545483:547538:-1 11/11 None
F57C12.2 ENSEMBL cdna:known chromosome:CEL140:X:545483:551368:-1 gene:F57C12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:545482-549936(-) 100.0 100.0
Public Domain and Genome References
Gene Title GTP-binding protein
Ensembl F57C12.2
Entrez Gene 180406 Entrez gene
SwissProt Q20940 EMBL-EBI
WormBase CE28471 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
5737 cytoplasm inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA83296 Hypothetical protein F57C12.2 [Caenorhabditis elegans] ref|NP_508118.1| F57C12.2 [Caenorhabditis elegans] 0.0
blast AAA83296 Hypothetical protein F57C12.2 [Caenorhabditis elegans] ref|NP_508118.1| F57C12.2 [Caenorhabditis elegans] 1.0E-170
blast AAA83296 Hypothetical protein F57C12.2 [Caenorhabditis elegans] ref|NP_508118.1| F57C12.2 [Caenorhabditis elegans] 1.0E-158
blast XP_656247 GTP-binding protein, putative [Entamoeba histolytica HM-1:IMSS] gb|EAL50844.1| GTP-binding protein, putative [Entamoeba histolytica HM-1:IMSS] 1.0E-24
blast XP_656247 GTP-binding protein, putative [Entamoeba histolytica HM-1:IMSS] gb|EAL50844.1| GTP-binding protein, putative [Entamoeba histolytica HM-1:IMSS] 4.0E-23
blast XP_452481 unnamed protein product [Kluyveromyces lactis] emb|CAH01332.1| unnamed protein product [Kluyveromyces lactis NRRL Y-1140] 7.0E-23
blast AAW25236 unknown [Schistosoma japonicum] 5.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR006762 EMBL-EBI Gtr1/RagA G protein 3.7E-103
Pfam IPR006762 EMBL-EBI Gtr1/RagA G protein 1.6E-6
Pfam IPR006762 EMBL-EBI Gtr1/RagA G protein 1.3E-76
Pfam IPR006762 EMBL-EBI Gtr1/RagA G protein 6.0E-99
Sequence
Target Sequence 
>C. ELEGANS:190262_AT
gttgcttctgaaacattctcctgaagcgaaaattttcattttccttaccaagactgacct
gctctccgtggacgaggataaggtaataacgcagctcaagtacgtcaaaactgaagtcat
aaagtgcaacagaaccattatgtgttgccagattgcgctcaactttaagatgaagtatct
ccccacgactgtttacgatcacacattcttcaaagcttggagcattgttttccagaatac
tttcaaggagccaagtcactggaaggagaaactccgcgcaatgggagaatctatgaacat
ggagcgaattgttctggtccagtactctaattacctgatcattgccaatttgcaaatcgg
ccagatgggaatggtagacgacccggaaatcggcacaaagtacctctatcccgtcacaac
cgacaacgacgatgtagatgctgagcagatgtttgacaggatcatatacttcaaacggtt
cacagaaaatctgatgctcctttgcgttgcaaaggacgattctctcgcttggtgtgacat
gc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGCTTCTGAAACATTCTCCTGAA 609 439 696 Antisense
ATTTTCCTTACCAAGACTGACCTGC 149 5 733 Antisense
CCTGCTCTCCGTGGACGAGGATAAG 190 267 753 Antisense
TTATGTGTTGCCAGATTGCGCTCAA 440 679 833 Antisense
GACTGTTTACGATCACACATTCTTC 15 377 882 Antisense
GGAGCGAATTGTTCTGGTCCAGTAC 511 521 996 Antisense
GGTCCAGTACTCTAATTACCTGATC 664 501 1011 Antisense
GGTAGACGACCCGGAAATCGGCACA 375 501 1068 Antisense
AATCGGCACAAAGTACCTCTATCCC 530 169 1083 Antisense
AGAAAATCTGATGCTCCTTTGCGTT 403 73 1179 Antisense
GATTCTCTCGCTTGGTGTGACATGC 72 433 1213 Antisense
Sequence Source Affymetrix Proprietary Database