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[190261_s_at] SET domain

Description R06A4.7 /REP_DB=WormBase Gene ID /WP=CE28067 /GEN=mes-2 /TR=O62335 /GB=CAB05589.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=SET domain
Cluster 6grp_high1_10_10 > 79      6grp_total > 89      4grp_total > 55      6grp_cgc > 59      6grp_high1_sub > Cu      6grp_cgc_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 170.5
(3)
P 		96.5
(-3)
M 		148.4
(1.2)
A 		102.4
(-2.5)
P 		74
B 162.3
(3)
P 		111.7
(-3)
A 		148.5
(1.4)
A 		138.7
(0.2)
P 		51
C 225.8
(3)
P 		133.9
(-2.4)
A 		123.8
(-3)
P 		127
(-2.8)
P 		102
avr 186.2
(3) 		114
(-3) 		140.2
(-0.8) 		122.7
(-2.3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 151.9
(-1.7)
M 		187.2
(-0.1)
P 		197.4
(0.3)
P 		121.7
(-3)
M 		172.7
(-0.8)
P 		258.8
(3)
P 		137
B 167.9
(-0.7)
P 		139.6
(-2)
P 		148.4
(-1.6)
M 		119.1
(-3)
P 		209.9
(1.3)
P 		244.8
(3)
P 		126
C 144
(-1.6)
P 		110.1
(-2.9)
A 		137.5
(-1.9)
P 		106.5
(-3)
M 		232.9
(1.6)
P 		269.6
(3)
P 		163
avr 154.6
(-1.4) 		145.6
(-1.7) 		161.1
(-1.1) 		115.8
(-3) 		205.2
(0.8) 		257.7
(3) 		142
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 62.1
(3)
P 		21
(-2.2)
M 		38.8
(0)
A 		15
(-3)
P 		47
B 51.8
(3)
P 		27.6
(-3)
A 		34.4
(-1.3)
A 		29.5
(-2.5)
P 		24
C 74.8
(3)
P 		38.5
(-1.1)
A 		43.1
(-0.6)
P 		21.4
(-3)
P 		53
avr 62.9
(3) 		29
(-2) 		38.8
(-0.5) 		22
(-3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 28
(-3)
M 		66.6
(3)
P 		43
(-0.7)
P 		30.9
(-2.5)
M 		52.1
(0.7)
P 		63
(2.4)
P 		39
B 58.4
(-0.3)
P 		46.5
(-1.5)
P 		36
(-2.6)
M 		31.6
(-3)
P 		85.3
(2.4)
P 		91.3
(3)
P 		60
C 53.4
(-0.2)
P 		33.6
(-1.9)
A 		35
(-1.8)
P 		21.4
(-3)
M 		75.4
(1.7)
P 		90.2
(3)
P 		69
avr 46.6
(-0.9) 		48.9
(-0.7) 		38
(-1.9) 		28
(-3) 		70.9
(1.8) 		81.5
(3) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190261_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3498
Sequence Type Exemplar sequence
Representative Public ID R06A4.7 NCBI
Target Description R06A4.7 /REP_DB=WormBase Gene ID /WP=CE28067 /GEN=mes-2 /TR=O62335 /GB=CAB05589.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=SET domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064591(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064591 NCBI Caenorhabditis elegans Maternal Effect Sterile family member (mes-2) (mes-2) mRNA, complete cds. 11/11 None
R06A4.7 ENSEMBL cdna:known chromosome:CEL140:II:14383866:14388344:1 gene:R06A4.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043649 5/11 Cross Hyb Matching Probes None
GENEFINDER00000043661 5/11 Cross Hyb Matching Probes None
SNAP00000043984 3/11 Cross Hyb Matching Probes None
GENEFINDER00000043985 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14383862-14388186(+) 100.0 100.0
Public Domain and Genome References
Gene Title SET domain
Gene Symbol mes-2
Ensembl R06A4.7
Entrez Gene 175096 Entrez gene
SwissProt O17514 EMBL-EBI
WormBase CE28067 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04199 Hypothetical protein R06A4.7 [Caenorhabditis elegans] emb|CAB05589.2| Hypothetical protein R06A4.7 [Caenorhabditis elegans] ref|NP_496992.3| Maternal Effect Sterile family member (mes-2) [Caenorhabditis elegans] sp|O17514|MES2_CAEEL Polycomb protein mes-2 (Maternal-effect sterile 2 protein) (E(z) homolog) 0.0
blast AAC27124 maternal-effect sterile 2 [Caenorhabditis elegans] 0.0
blast T21436 hypothetical protein R06A4.7 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001214 EMBL-EBI Nuclear protein SET 5.2E-38
Sequence
Target Sequence 
>C. ELEGANS:190261_S_AT
cgattcccgggatgcaattgcgccgccggtcagtgctacacgaaggcttgccagtgctat
cgagccaattgggaatgtaatccgatgacgtgtaatatgtgcaaatgcgacgccatcgac
tcgaacataataaaatgccgcaattttggaatgactagaatgatccaaaaacgaacgtat
tgcgggccatcgaaaatagcaggcaatggacttttcttgttggaacccgccgaaaaagac
gagttcattacggaatacactggtgaacgaatttccgatgatgaagccgaacgacgcggt
gcgatatatgatcgatatcagtgcagctacatttttaacattgaaaccgggggtgcgatc
gattcgtacaaaattggaaacttggcacgatttgccaatcatgacagcaagaatccgacg
tgctacgcgagaacgatggttgtcgccggagagcaccgaattgggttctatgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGATTCCCGGGATGCAATTGCGCCG 411 247 1711 Antisense
CCGCCGGTCAGTGCTACACGAAGGC 332 261 1733 Antisense
CGAAGGCTTGCCAGTGCTATCGAGC 612 251 1751 Antisense
TGCAAATGCGACGCCATCGACTCGA 404 577 1810 Antisense
AACGAACGTATTGCGGGCCATCGAA 483 141 1880 Antisense
GCAGGCAATGGACTTTTCTTGTTGG 186 311 1909 Antisense
GAAGCCGAACGACGCGGTGCGATAT 622 343 1993 Antisense
TGAAACCGGGGGTGCGATCGATTCG 658 569 2052 Antisense
ATCCGACGTGCTACGCGAGAACGAT 87 39 2123 Antisense
AACGATGGTTGTCGCCGGAGAGCAC 647 143 2142 Antisense
GAGAGCACCGAATTGGGTTCTATGC 507 393 2159 Antisense
Sequence Source Affymetrix Proprietary Database