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[190255_s_at] zinc finger protein

Description C49D10.9 /REP_DB=WormBase Gene ID /WP=CE08850 /TR=O16603 /GB=AAC71182.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_total > 53      4grp_total > 13      6grp_cgc > 91      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 45.8
(3)
A 		22.2
(-1.2)
A 		12.3
(-3)
A 		17
(-2.2)
A 		34
B 20.7
(3)
A 		13.7
(-0.5)
A 		12.4
(-1.2)
A 		8.7
(-3)
A 		12
C 8
(-3)
A 		12.7
(-2.6)
A 		7.8
(-3)
A 		78.9
(3)
A 		71
avr 24.8
(0.5) 		16.2
(-1.7) 		10.8
(-3) 		34.9
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 9.9
(-2.3)
A 		8.1
(-2.5)
A 		56.8
(3)
A 		6.5
(-2.6)
A 		10.6
(-2.2)
A 		3.2
(-3)
A 		54
B 5.8
(-2.3)
A 		3.7
(-2.9)
A 		24.4
(3)
A 		5.4
(-2.5)
A 		12.4
(-0.4)
A 		3.5
(-3)
A 		21
C 6.5
(-2.2)
A 		39.2
(3)
A 		33.2
(2.1)
A 		3.8
(-2.6)
A 		19.8
(-0.1)
A 		1.2
(-3)
A 		38
avr 7.4
(-2.2) 		17
(-0.6) 		38.1
(3) 		5.2
(-2.6) 		14.3
(-1) 		2.6
(-3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 16.7
(3)
A 		4.8
(-2)
A 		3.2
(-2.7)
A 		2.5
(-3)
A 		14
B 6.6
(3)
A 		3.4
(-1)
A 		2.9
(-1.6)
A 		1.8
(-3)
A 		5
C 2.6
(-3)
A 		3.7
(-2.4)
A 		2.7
(-2.9)
A 		13.3
(3)
A 		11
avr 8.6
(3) 		4
(-1.8) 		2.9
(-3) 		5.9
(0.2) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.8
(-2.5)
A 		2.9
(-1.9)
A 		12.4
(3)
A 		1.6
(-2.6)
A 		3.2
(-1.8)
A 		0.8
(-3)
A 		12
B 2
(-2)
A 		1.2
(-3)
A 		5.9
(3)
A 		1.4
(-2.7)
A 		5.1
(2)
A 		1.3
(-2.9)
A 		5
C 2.4
(-2)
A 		12
(3)
A 		8.5
(1.2)
A 		0.8
(-2.8)
A 		6.4
(0.1)
A 		0.4
(-3)
A 		12
avr 2.1
(-2) 		5.4
(0.4) 		8.9
(3) 		1.3
(-2.6) 		4.9
(0) 		0.8
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190255_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4482
Sequence Type Exemplar sequence
Representative Public ID C49D10.9 NCBI
Target Description C49D10.9 /REP_DB=WormBase Gene ID /WP=CE08850 /TR=O16603 /GB=AAC71182.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062271(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062271 NCBI Caenorhabditis elegans C17A2.1 (C17A2.1) mRNA, complete cds. 11/11 None
SNAP00000008439 ENSEMBL cdna:SNAP chromosome:CEL140:II:3863185:3864125:-1 11/11 None
GENEFINDER00000008451 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3863185:3865396:-1 11/11 None
SNAP00000028371 ENSEMBL cdna:SNAP chromosome:CEL140:II:3853583:3854509:1 9/11 None
GENEFINDER00000028376 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3852983:3854598:1 11/11 None
C17A2.1 ENSEMBL cdna:known chromosome:CEL140:II:3852983:3854608:1 gene:C17A2.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062274 6/11 Cross Hyb Matching Probes None
C49D10.9 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3852981-3854607(+) 91.55 91.55
chrII:3863183-3864744(-) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Gene Symbol nhr-257
Ensembl C17A2.1
Entrez Gene 182697 Entrez gene
SwissProt O16538 EMBL-EBI
WormBase CE34694 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66025 Hypothetical protein C17A2.1 [Caenorhabditis elegans] ref|NP_494672.2| C17A2.1 [Caenorhabditis elegans] 0.0
blast AAB66025 Hypothetical protein C17A2.1 [Caenorhabditis elegans] ref|NP_494672.2| C17A2.1 [Caenorhabditis elegans] 1.0E-167
blast AAB66025 Hypothetical protein C17A2.1 [Caenorhabditis elegans] ref|NP_494672.2| C17A2.1 [Caenorhabditis elegans] 1.0E-117
blast AAB66025 Hypothetical protein C17A2.1 [Caenorhabditis elegans] ref|NP_494672.2| C17A2.1 [Caenorhabditis elegans] 1.0E-112
blast CAA18368 Hypothetical protein ZK1025.9 [Caenorhabditis elegans] ref|NP_492931.1| Nuclear Hormone Receptor family member (nhr-113) [Caenorhabditis elegans] 3.0E-98
blast AAO39200 nuclear receptor NHR-113 [Caenorhabditis elegans] 3.0E-98
Protein Domains
Database ID Description E-Value
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 5.0E-9
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 9.2E-9
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 4.3E-9
Sequence
Target Sequence 
>C. ELEGANS:190255_S_AT
accggctcagcaatggaatcatgttttcaatgccccgggataaacttattggaaaaagaa
gatattcaagtatttctacgatactttgaattttcaaatgtttggattgattctcttcgt
gagtactcactaatgtcccattctcacaacaaggaaatttctagaactgacaaaaaagta
atgaaattcattaatcaagttaaatcaactcttggaactgcacttattcatttgaaactg
aacatttatgaattcgcagcattcaaatcgttttgcatctggaatataaaatttcataaa
acgtcacgaatcatgagaattgttgcacaaagccattacatggcagtttcttttgcattg
agaatgtactataagaaccaactgaaactgagcgacatggaaatcgccattcgaatcgga
gatattacattgcaaattgccaccgtttctacaatttatcatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCGGCTCAGCAATGGAATCATGTT 320 89 550 Antisense
TGGAATCATGTTTTCAATGCCCCGG 295 547 563 Antisense
CAATGCCCCGGGATAAACTTATTGG 346 175 577 Antisense
GTTTGGATTGATTCTCTTCGTGAGT 218 453 649 Antisense
GTGAGTACTCACTAATGTCCCATTC 695 483 668 Antisense
CTAATGTCCCATTCTCACAACAAGG 469 227 679 Antisense
AATCAACTCTTGGAACTGCACTTAT 366 171 752 Antisense
GGAACTGCACTTATTCATTTGAAAC 283 529 763 Antisense
TGGAAATCGCCATTCGAATCGGAGA 554 547 947 Antisense
TTGCAAATTGCCACCGTTTCTACAA 401 703 979 Antisense
GCCACCGTTTCTACAATTTATCATG 567 279 988 Antisense
Sequence Source Affymetrix Proprietary Database