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[190254_at] alcohol dehydrogenase

Description C55A6.5 /REP_DB=WormBase Gene ID /WP=CE09002 /TR=P90780 /GB=CAB02865.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=alcohol dehydrogenase
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 66      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_highest_nonorm > 58      6grp_total > 57      4grp_total > 14      6grp_highest_sub > Da      6grp_cgc > 47      6grp_high1_sub > Da      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2004
1 2 3 4 range
A 2046.5
(1.7)
P 		650
(-2.9)
P 		625.7
(-3)
P 		2428.9
(3)
P 		1803
B 2191.8
(3)
P 		519.6
(-2.7)
P 		424.6
(-3)
P 		2196.7
(3)
P 		1772
C 2090.4
(2)
P 		549.1
(-3)
P 		555.7
(-3)
P 		2389.8
(3)
P 		1841
avr 2109.6
(2.2) 		572.9
(-2.9) 		535.3
(-3) 		2338.5
(3) 		1803

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3092
1 2 3 4 5 6 range
A 3466.3
(2.7)
P 		1477.6
(-3)
P 		3178.3
(1.8)
P 		2441.9
(-0.3)
P 		1982.2
(-1.6)
P 		3586.8
(3)
P 		2109
B 2945.8
(0.1)
P 		1702.6
(-3)
P 		3267.9
(0.9)
P 		2856.8
(-0.2)
P 		2406.6
(-1.3)
P 		4134.1
(3)
P 		2432
C 2434.4
(-1.1)
P 		1767.9
(-2.4)
P 		2190.4
(-1.6)
P 		3595.4
(1.1)
P 		1459.6
(-3)
P 		4551.5
(3)
P 		3092
avr 2948.8
(0.2) 		1649.4
(-3) 		2878.9
(0) 		2964.7
(0.2) 		1949.5
(-2.3) 		4090.8
(3) 		2441
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 647
1 2 3 4 range
A 745.1
(3)
P 		141.1
(-3)
P 		163.6
(-2.8)
P 		355.6
(-0.9)
P 		604
B 698.9
(3)
P 		128.3
(-2.7)
P 		98.4
(-3)
P 		468.1
(0.7)
P 		601
C 692
(3)
P 		157.9
(-3)
P 		193.7
(-2.6)
P 		403
(-0.2)
P 		534
avr 712
(3) 		142.4
(-3) 		151.9
(-2.9) 		408.9
(-0.2) 		570

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1069
1 2 3 4 5 6 range
A 639
(-1)
P 		525.5
(-3)
P 		692.2
(-0.1)
P 		619.3
(-1.4)
P 		598.1
(-1.7)
P 		873.3
(3)
P 		348
B 1025
(-0.2)
P 		566.7
(-3)
P 		793.5
(-1.6)
P 		756.7
(-1.8)
P 		977.8
(-0.5)
P 		1541.6
(3)
P 		975
C 902.3
(-0.5)
P 		539.4
(-2.6)
P 		557.5
(-2.5)
P 		723
(-1.6)
P 		472.3
(-3)
P 		1523.7
(3)
P 		1051
avr 855.4
(-0.6) 		543.9
(-3) 		681.1
(-1.9) 		699.7
(-1.8) 		682.7
(-1.9) 		1312.9
(3) 		769
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190254_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13674
Sequence Type Exemplar sequence
Representative Public ID C55A6.5 NCBI
Target Description C55A6.5 /REP_DB=WormBase Gene ID /WP=CE09002 /TR=P90780 /GB=CAB02865.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=alcohol dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073520(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073520 NCBI Caenorhabditis elegans C55A6.5 (C55A6.5) mRNA, complete cds. 11/11 None
SNAP00000029772 ENSEMBL cdna:SNAP chromosome:CEL140:V:11516422:11518767:-1 9/11 None
GENEFINDER00000029787 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11517742:11518767:-1 11/11 None
C55A6.5 ENSEMBL cdna:known chromosome:CEL140:V:11517742:11518767:-1 gene:C55A6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11517741-11518767(-) 100.0 100.0
Public Domain and Genome References
Gene Title alcohol dehydrogenase
Gene Symbol sdz-8
Ensembl C55A6.5
Entrez Gene 183834 Entrez gene
SwissProt P90780 EMBL-EBI
WormBase CE09002 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CHICKEN:GGA.7259.1.A1_AT similar to CG10964-PA gga
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02866 Hypothetical protein C55A6.6 [Caenorhabditis elegans] ref|NP_505920.1| C55A6.6 [Caenorhabditis elegans] 1.0E-135
blast CAB02865 Hypothetical protein C55A6.5 [Caenorhabditis elegans] ref|NP_505921.1| C55A6.5 [Caenorhabditis elegans] pdb|1YO6|F Chain F, Crystal Structure Of The Putative Carbonyl Reductase Sniffer Of Caenorhabditis Elegans pdb|1YO6|E Chain E, Crystal Structure Of The Putative Carbonyl Reductase Sniffer Of Caenorhabditis Elegans pdb|1YO6|D Chain D, Crystal Structure Of The Putative Carbonyl Reductase Sniffer Of Caenorhabditis Elegans pdb|1YO6|C Chain C, Crystal Structure Of The Putative Carbonyl Reductase Sniffer Of Caenorhabditis Elegans pdb|1YO6|B Chain B, Crystal Structure Of The Putative Carbonyl Reductase Sniffer Of Caenorhabditis Elegans pdb|1YO6|A Chain A, Crystal Structure Of The Putative Carbonyl Reductase Sniffer Of Caenorhabditis Elegans 1.0E-120
blast CAE75267 Hypothetical protein CBG23230 [Caenorhabditis briggsae] 1.0E-109
blast CAB02865 Hypothetical protein C55A6.5 [Caenorhabditis elegans] ref|NP_505921.1| C55A6.5 [Caenorhabditis elegans] pdb|1YO6|F Chain F, Crystal Structure Of The Putative Carbonyl Reductase Sniffer Of Caenorhabditis Elegans pdb|1YO6|E Chain E, Crystal Structure Of The Putative Carbonyl Reductase Sniffer Of Caenorhabditis Elegans pdb|1YO6|D Chain D, Crystal Structure Of The Putative Carbonyl Reductase Sniffer Of Caenorhabditis Elegans pdb|1YO6|C Chain C, Crystal Structure Of The Putative Carbonyl Reductase Sniffer Of Caenorhabditis Elegans pdb|1YO6|B Chain B, Crystal Structure Of The Putative Carbonyl Reductase Sniffer Of Caenorhabditis Elegans pdb|1YO6|A Chain A, Crystal Structure Of The Putative Carbonyl Reductase Sniffer Of Caenorhabditis Elegans 1.0E-108
blast CAE75267 Hypothetical protein CBG23230 [Caenorhabditis briggsae] 7.0E-98
blast CAB02866 Hypothetical protein C55A6.6 [Caenorhabditis elegans] ref|NP_505920.1| C55A6.6 [Caenorhabditis elegans] 6.0E-96
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 3.0E-18
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 1.1E-16
Sequence
Target Sequence 
>C. ELEGANS:190254_AT
cacgtgttcatgtacttccattgacagtcacttgtgataaatcacttgacacttttgtgt
cgaaagttggagaaattgttggatctgatgggctcagcttgctgataaataacgctggag
ttctgctgagctacggaacgaatacggagcctaaccgtgccgtcatcgccgaacaactag
atgtaaatacgactagtgtggtccttctcactcaaaagttattaccactgctcaaaaatg
cagcatccaaagaatctggagatcaactttccgtttcacgtgctgctgtaatcactatct
catctggacttggttccatcactgacaacacatctggatctgcacaattcccagttctcg
cctacagaatgagcaaagctgctatcaatatgttcggaagaactcttgctgttgacttga
aggatgataatgtgttggttgttaacttctgtccaggatgggtgcaaaccaatttaggag
ggaagaatgcagcactcacggttgaacaatccaccgccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACGTGTTCATGTACTTCCATTGAC 360 199 164 Antisense
GATCTGATGGGCTCAGCTTGCTGAT 256 419 245 Antisense
AACGCTGGAGTTCTGCTGAGCTACG 199 145 274 Antisense
CGAATACGGAGCCTAACCGTGCCGT 564 251 302 Antisense
ATACGACTAGTGTGGTCCTTCTCAC 341 19 350 Antisense
GGACTTGGTTCCATCACTGACAACA 465 525 469 Antisense
TGGATCTGCACAATTCCCAGTTCTC 134 551 498 Antisense
CCCAGTTCTCGCCTACAGAATGAGC 257 259 513 Antisense
GTTGGTTGTTAACTTCTGTCCAGGA 260 433 597 Antisense
AAGAATGCAGCACTCACGGTTGAAC 161 153 646 Antisense
TCACGGTTGAACAATCCACCGCCGA 160 625 659 Antisense
Sequence Source Affymetrix Proprietary Database