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[190253_at] zinc finger portein

Description C33G8.10 /REP_DB=WormBase Gene ID /WP=CE06919 /TR=Q18395 /GB=AAC25853.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger portein
Cluster 6grp_high1_10_10 > 65      4grp_high_8_8 > 14      6grp_total > 55      4grp_total > 02      6grp_cgc > 36      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 174
1 2 3 4 range
A 39.6
(-1.1)
P 		9.6
(-3)
A 		34
(-1.5)
A 		105.6
(3)
P 		96
B 49.7
(-3)
P 		61.1
(-2.5)
P 		49.6
(-3)
A 		183.4
(3)
P 		134
C 49.4
(-3)
P 		53
(-2.6)
P 		52.3
(-2.7)
P 		105.3
(3)
P 		56
avr 46.2
(-2.7) 		41.2
(-3) 		45.3
(-2.7) 		131.4
(3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 83.9
(3)
P 		36.1
(-3)
P 		83.2
(2.9)
P 		60.8
(0.1)
P 		43.2
(-2.1)
P 		76
(2)
P 		48
B 60.3
(-3)
P 		70.4
(-1.1)
P 		88.8
(2.3)
P 		92.7
(3)
P 		63.8
(-2.4)
P 		88
(2.1)
P 		32
C 88.9
(3)
P 		65.3
(0.2)
P 		57.8
(-0.7)
P 		38.9
(-3)
A 		42.2
(-2.6)
P 		86.5
(2.7)
P 		50
avr 77.7
(2) 		57.3
(-1.7) 		76.6
(1.8) 		64.1
(-0.4) 		49.7
(-3) 		83.5
(3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 14.4
(2.5)
P 		2.1
(-3)
A 		8.9
(0)
A 		15.5
(3)
P 		13
B 15.8
(-2.1)
P 		15.1
(-2.2)
P 		11.5
(-3)
A 		39.1
(3)
P 		28
C 16.4
(-0.6)
P 		15.2
(-3)
P 		18.2
(3)
P 		17.7
(2)
P 		3
avr 15.5
(-0.9) 		10.8
(-3) 		12.9
(-2.1) 		24.1
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 15.5
(-0.2)
P 		12.8
(-3)
P 		18.1
(2.6)
P 		15.4
(-0.3)
P 		13
(-2.8)
P 		18.5
(3)
P 		6
B 21
(-3)
P 		23.4
(-1.8)
P 		21.6
(-2.7)
P 		24.5
(-1.2)
P 		25.9
(-0.5)
P 		32.8
(3)
P 		12
C 32.9
(3)
P 		19.9
(-0.1)
P 		14.7
(-1.4)
P 		7.8
(-3)
A 		13.7
(-1.6)
P 		29
(2.1)
P 		25
avr 23.1
(1) 		18.7
(-1.5) 		18.1
(-1.8) 		15.9
(-3) 		17.5
(-2.1) 		26.8
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190253_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12382
Sequence Type Exemplar sequence
Representative Public ID C33G8.10 NCBI
Target Description C33G8.10 /REP_DB=WormBase Gene ID /WP=CE06919 /TR=Q18395 /GB=AAC25853.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger portein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072368(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072368 NCBI Caenorhabditis elegans C33G8.10 (C33G8.10) mRNA, complete cds. 11/11 None
GENEFINDER00000000549 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6992849:6994454:-1 11/11 None
C33G8.10 ENSEMBL cdna:known chromosome:CEL140:V:6992849:6994454:-1 gene:C33G8.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000530 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6992849-6994455(-) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger portein
Gene Symbol nhr-162
Ensembl C33G8.10
Entrez Gene 183181 Entrez gene
SwissProt Q18395 EMBL-EBI
WormBase CE06919 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC25853 Hypothetical protein C33G8.10 [Caenorhabditis elegans] ref|NP_504769.1| C33G8.10 [Caenorhabditis elegans] 0.0
blast AAC25851 Hypothetical protein C33G8.9 [Caenorhabditis elegans] ref|NP_504768.1| C33G8.9 [Caenorhabditis elegans] 1.0E-116
blast AAC25852 Hypothetical protein C33G8.8 [Caenorhabditis elegans] ref|NP_504767.1| C33G8.8 [Caenorhabditis elegans] 1.0E-116
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 0.011
Sequence
Target Sequence 
>C. ELEGANS:190253_AT
gagacacgcatcttttatgggatcttggagagaaaatatttacagatgtaaaacttttga
gtgaggctgataagcattcaattctttgcaatttttttcctcgatggatgatgttggatt
cagctgtagcgatttgtccagattacgaagaatcaaaggcttatatcaaatctaaagatt
atacggatatgttacttcatttttacggatcatcgatgccgaaagaaaaacgattaaagg
atcacgaaattttaaaaatattcaaaccatactgggatttccattattacgagaccgctg
ttccgattcatttcaaaaaactcgacaaaattgagtacatggctatttttctgttgctac
tttttgatgatgcatacacaaatatcagtgaggaaggcgtaaagttgtgtcaaaatgtgc
gaaaagtggttcaacgagaactaaaaggataccaaactgacagcaattgcgacgaaatgc
gttttgtggaaacaatggatactttgttgttgctagaaaaagccgaggaaaaaatacaag
aagaagtgcttatctgcgggtttaata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGACACGCATCTTTTATGGGATCT 316 393 437 Antisense
GGCTGATAAGCATTCAATTCTTTGC 141 541 501 Antisense
TTGCAATTTTTTTCCTCGATGGATG 45 705 522 Antisense
GATGATGTTGGATTCAGCTGTAGCG 327 411 543 Antisense
GCTGTAGCGATTTGTCCAGATTACG 452 295 559 Antisense
GTTACTTCATTTTTACGGATCATCG 57 447 627 Antisense
GGGATTTCCATTATTACGAGACCGC 403 493 710 Antisense
TTATTACGAGACCGCTGTTCCGATT 649 677 720 Antisense
CATGGCTATTTTTCTGTTGCTACTT 314 209 774 Antisense
AATGGATACTTTGTTGTTGCTAGAA 688 161 930 Antisense
GAAGTGCTTATCTGCGGGTTTAATA 32 333 979 Antisense
Sequence Source Affymetrix Proprietary Database