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[190252_s_at]

Description F22B3.3 /REP_DB=WormBase Gene ID /WP=CE03254 /TR=Q19700 /GB=CAA92736.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=reverse transcriptase
Cluster 6grp_total > 05      4grp_total > 11      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 170
1 2 3 4 range
A 54.1
(-2.4)
A 		81.5
(-1.4)
P 		35.9
(-3)
A 		205.4
(3)
P 		170
B 82.7
(0.7)
A 		52.6
(-3)
A 		79.1
(0.2)
A 		101.7
(3)
A 		49
C 62
(-2.4)
A 		68
(-2)
A 		54.2
(-3)
A 		134.3
(3)
P 		80
avr 66.3
(-2.3) 		67.4
(-2.3) 		56.4
(-3) 		147.1
(3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 63.1
(3)
A 		53.4
(2)
A 		45.1
(1.1)
A 		5.6
(-3)
A 		52.2
(1.9)
A 		26.3
(-0.8)
A 		58
B 55.4
(1.3)
A 		45.2
(0.4)
A 		74.6
(3)
A 		51.4
(1)
A 		36.9
(-0.3)
A 		5.6
(-3)
A 		69
C 69.3
(3)
A 		52.6
(0.8)
A 		24.4
(-3)
A 		36.5
(-1.4)
A 		57.8
(1.5)
A 		43.4
(-0.5)
A 		45
avr 62.6
(3) 		50.4
(1) 		48
(0.7) 		31.2
(-2) 		49
(0.8) 		25.1
(-3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 19.7
(-0)
A 		17.7
(-0.6)
P 		9.4
(-3)
A 		30.1
(3)
P 		21
B 26.4
(3)
A 		13
(-3)
A 		18.3
(-0.6)
A 		21.7
(0.9)
A 		13
C 20.5
(-0.4)
A 		19.6
(-1.9)
A 		18.9
(-3)
A 		22.6
(3)
P 		4
avr 22.2
(1.3) 		16.8
(-2.2) 		15.5
(-3) 		24.8
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 11.6
(0.5)
A 		19
(3)
A 		9.8
(-0.1)
A 		1.4
(-3)
A 		15.8
(1.9)
A 		6.4
(-1.3)
A 		18
B 19.3
(3)
A 		15.1
(1.5)
A 		18.1
(2.6)
A 		13.6
(1)
A 		15
(1.5)
A 		2.1
(-3)
A 		17
C 25.7
(3)
A 		16
(0)
A 		6.2
(-3)
A 		7.3
(-2.7)
A 		18.7
(0.8)
A 		14.5
(-0.4)
A 		20
avr 18.9
(3) 		16.7
(1.9) 		11.4
(-0.9) 		7.4
(-3) 		16.5
(1.7) 		7.7
(-2.8) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190252_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9097
Sequence Type Exemplar sequence
Representative Public ID F22B3.3 NCBI
Target Description F22B3.3 /REP_DB=WormBase Gene ID /WP=CE03254 /TR=Q19700 /GB=CAA92736.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=reverse transcriptase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C53C7.4 ENSEMBL cdna:pseudogene chromosome:CEL140:X:13048907:13049861:1 gene:C53C7.4 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
ZK666.9 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11408056-11409859(+) 35.0 100.0
chrI:14256346-14258149(-) 34.33 98.34
Public Domain and Genome References
Ensembl C53C7.4
Sequence
Target Sequence 
>C. ELEGANS:190252_S_AT
ccttggtctctacactgactccaagttaacgtttcaaccccatataaacagagccacttc
tcttgccctcttacgcgctaaacaaatcctcaaatgtttctcctcttcttcccctaaatt
ctatataagtatgtacaagacctacgtttcccctatccttgaatacggatcagtcatata
ctcccctccaccaacatctaaattatcaagcacactagaatctcccctcaaatacttttc
taaacgggtcctacagcgctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTTGGTCTCTACACTGACTCCAAG 165 267 1197 Antisense
GGTCTCTACACTGACTCCAAGTTAA 299 503 1201 Antisense
CTACACTGACTCCAAGTTAACGTTT 51 227 1206 Antisense
ATAAACAGAGCCACTTCTCTTGCCC 253 25 1240 Antisense
CCTCTTACGCGCTAAACAAATCCTC 426 267 1263 Antisense
ACAAATCCTCAAATGTTTCTCCTCT 663 111 1278 Antisense
TATGTACAAGACCTACGTTTCCCCT 117 655 1326 Antisense
GTTTCCCCTATCCTTGAATACGGAT 541 449 1342 Antisense
TCCCCTATCCTTGAATACGGATCAG 133 597 1345 Antisense
TACGGATCAGTCATATACTCCCCTC 361 647 1360 Antisense
TTTCTAAACGGGTCCTACAGCGCTG 313 671 1433 Antisense
Sequence Source Affymetrix Proprietary Database