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[190246_at] alcohol dehydrogenase

Description K08F4.9 /REP_DB=WormBase Gene ID /WP=CE06157 /TR=Q21359 /GB=CAA93099.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=alcohol dehydrogenase
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 73      4grp_highest_8_8 > 21      4grp_high_8_8 > 23      6grp_highest_nonorm > 46      6grp_total > 63      4grp_total > 0      6grp_highest_sub > 03_04      6grp_cgc > 76      6grp_high1_sub > 03_04      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 800
1 2 3 4 range
A 1212.3
(-3)
P 		1330.9
(-2)
P 		1841.2
(2.3)
P 		1930.5
(3)
P 		718
B 1417.5
(-1.6)
P 		1243.6
(-3)
P 		1756.1
(1)
P 		2012.2
(3)
P 		769
C 1230.2
(-3)
P 		1271
(-2.7)
P 		1581.8
(-0.2)
P 		1992
(3)
P 		762
avr 1286.7
(-3) 		1281.8
(-3) 		1726.4
(0.8) 		1978.2
(3) 		696

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1897
1 2 3 4 5 6 range
A 2239.6
(-1.9)
P 		1908.6
(-3)
P 		3685.5
(3)
P 		3294.9
(1.7)
P 		2390.5
(-1.4)
P 		2180.5
(-2.1)
P 		1777
B 2130
(-3)
P 		2252.8
(-2.5)
P 		3680.3
(3)
P 		3165.5
(1)
P 		2575.4
(-1.3)
P 		2731.1
(-0.7)
P 		1550
C 1788.4
(-3)
P 		2254.6
(-1.4)
P 		3005.8
(1.1)
P 		3591.4
(3)
P 		2168.2
(-1.7)
P 		3126.4
(1.5)
P 		1803
avr 2052.7
(-3) 		2138.7
(-2.6) 		3457.2
(3) 		3350.6
(2.5) 		2378
(-1.6) 		2679.3
(-0.3) 		1405
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 269
1 2 3 4 range
A 441.4
(1.8)
P 		288.9
(-2.8)
P 		481.3
(3)
P 		282.6
(-3)
P 		199
B 452
(3)
P 		307.1
(-3)
P 		406.9
(1.1)
P 		428.8
(2)
P 		145
C 407.2
(-1)
P 		365.4
(-2.2)
P 		551.3
(3)
P 		335.9
(-3)
P 		215
avr 433.5
(1.3) 		320.5
(-3) 		479.8
(3) 		349.1
(-1.9) 		159

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 634
1 2 3 4 5 6 range
A 412.9
(-3)
P 		678.8
(0.8)
P 		802.6
(2.5)
P 		835.7
(3)
P 		721.3
(1.4)
P 		530.9
(-1.3)
P 		423
B 741.1
(-3)
P 		749.9
(-2.8)
P 		893.7
(-0)
P 		838.4
(-1.1)
P 		1046.4
(3)
P 		1018.4
(2.4)
P 		305
C 662.9
(-3)
P 		687.9
(-2.6)
P 		765
(-1.4)
P 		722.2
(-2.1)
P 		701.6
(-2.4)
P 		1046.6
(3)
P 		384
avr 605.6
(-3) 		705.5
(-0.7) 		820.4
(2) 		798.8
(1.5) 		823.1
(2) 		865.3
(3) 		260
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190246_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8751
Sequence Type Exemplar sequence
Representative Public ID K08F4.9 NCBI
Target Description K08F4.9 /REP_DB=WormBase Gene ID /WP=CE06157 /TR=Q21359 /GB=CAA93099.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=alcohol dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069449(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069449 NCBI Caenorhabditis elegans DeHydrogenases, Short chain family member (dhs-12) (dhs-12) mRNA, complete cds. 11/11 None
K08F4.9 ENSEMBL cdna:known chromosome:CEL140:IV:10145220:10146192:1 gene:K08F4.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10145227-10146133(+) 100.0 100.0
Public Domain and Genome References
Gene Title alcohol dehydrogenase
Gene Symbol dhs-12
Ensembl K08F4.9
Entrez Gene 177888 Entrez gene
SwissProt Q21359 EMBL-EBI
WormBase CE06157 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93099 Hypothetical protein K08F4.9 [Caenorhabditis elegans] emb|CAA93091.1| Hypothetical protein K08F4.9 [Caenorhabditis elegans] ref|NP_501850.1| DeHydrogenases, Short chain family member (dhs-12) [Caenorhabditis elegans] 1.0E-129
blast CAE59960 Hypothetical protein CBG03450 [Caenorhabditis briggsae] 1.0E-108
blast T24440 hypothetical protein T04B2.1 - Caenorhabditis elegans 4.0E-77
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 7.4E-15
Sequence
Target Sequence 
>C. ELEGANS:190246_AT
tcgtcttcacttgatcgcagttgacgtttccaacgatggaagtctcgagaattctgttaa
atcagtttctggaatagtcggagatcgtggtctgaacttgctcattaataatgctggact
cattgaatcatatggaactacatctgctccaaatcgtgcttcggtcttgcactgtatcga
tgtgaatgctgtcagcgcactgctagcttcgcagcatttccttcctcttctccaaaaagc
agctagccacgtctctggagattccctcacacctgaccgtgccgcaatcgtgaacattgg
ctctgactgtgcatcacaagcactcaatctgcgtggatccggtccgtcgaactcacttct
tgcctacaaaatgagcaaagttgctatgttaagcttctctcgctcgatggctgcagactt
caagcgtctcgaaattccagttctgatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGTCTTCACTTGATCGCAGTTGAC 677 603 171 Antisense
GATCGTGGTCTGAACTTGCTCATTA 256 417 253 Antisense
CTACATCTGCTCCAAATCGTGCTTC 398 227 308 Antisense
TGCTTCGGTCTTGCACTGTATCGAT 393 579 327 Antisense
TGACCGTGCCGCAATCGTGAACATT 622 569 444 Antisense
GAACATTGGCTCTGACTGTGCATCA 280 351 462 Antisense
CAAGCACTCAATCTGCGTGGATCCG 398 185 487 Antisense
CGAACTCACTTCTTGCCTACAAAAT 284 253 518 Antisense
GTTGCTATGTTAAGCTTCTCTCGCT 700 439 550 Antisense
GATGGCTGCAGACTTCAAGCGTCTC 476 405 576 Antisense
GCGTCTCGAAATTCCAGTTCTGATC 599 291 594 Antisense
Sequence Source Affymetrix Proprietary Database