[Home] | [Total List]

[190245_at] zinc finger protein

Description C46E10.9 /REP_DB=WormBase Gene ID /WP=CE08767 /TR=O44720 /GB=AAB96693.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_total > 90      4grp_total > 16      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 41.3
(-3)
A 		41.5
(-3)
A 		116.2
(-0.2)
A 		200
(3)
A 		159
B 61.9
(-2.4)
A 		55.5
(-3)
A 		120.8
(3)
A 		75.8
(-1.1)
A 		65
C 54.7
(-3)
A 		86.6
(-0.7)
A 		63.7
(-2.4)
A 		139.6
(3)
P 		85
avr 52.6
(-3) 		61.2
(-2.4) 		100.2
(0.3) 		138.5
(3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 66.4
(-1.4)
A 		57.6
(-3)
A 		90.3
(3)
A 		81.5
(1.4)
A 		57.6
(-3)
A 		73.7
(-0)
A 		33
B 74.9
(2.3)
A 		23.3
(-2.2)
A 		14.6
(-3)
A 		51.8
(0.3)
A 		82.3
(3)
A 		71
(2)
A 		68
C 56
(0.3)
A 		54.6
(0.2)
A 		17.4
(-3)
A 		86.8
(3)
A 		59.2
(0.6)
A 		54.2
(0.2)
A 		69
avr 65.8
(1.6) 		45.2
(-2.2) 		40.8
(-3) 		73.4
(3) 		66.4
(1.7) 		66.3
(1.7) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 15
(-1.3)
A 		9
(-3)
A 		30.4
(3)
A 		29.3
(2.7)
A 		21
B 19.7
(-0.5)
A 		13.7
(-3)
A 		28
(3)
A 		16.1
(-2)
A 		14
C 18.1
(-3)
A 		24.9
(3)
A 		22.2
(0.6)
A 		23.5
(1.8)
P 		7
avr 17.6
(-2.1) 		15.9
(-3) 		26.9
(3) 		23
(0.9) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 12.2
(-3)
A 		20.5
(2.9)
A 		19.7
(2.3)
A 		20.7
(3)
A 		17.4
(0.7)
A 		17.9
(1)
A 		9
B 26.1
(1.5)
A 		7.7
(-2.2)
A 		3.5
(-3)
A 		13.7
(-1)
A 		33.4
(3)
A 		26.5
(1.6)
A 		30
C 20.8
(3)
A 		16.7
(1.5)
A 		4.4
(-3)
A 		17.5
(1.8)
A 		19.1
(2.4)
A 		18.1
(2)
A 		16
avr 19.7
(1.5) 		15
(-0.5) 		9.2
(-3) 		17.3
(0.4) 		23.3
(3) 		20.8
(1.9) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190245_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5809
Sequence Type Exemplar sequence
Representative Public ID C46E10.9 NCBI
Target Description C46E10.9 /REP_DB=WormBase Gene ID /WP=CE08767 /TR=O44720 /GB=AAB96693.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062232(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062232 NCBI Caenorhabditis elegans C46E10.9 (C46E10.9) mRNA, complete cds. 11/11 None
C46E10.9 ENSEMBL cdna:known chromosome:CEL140:II:3727766:3729439:-1 gene:C46E10.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3727737-3729463(-) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Ensembl C46E10.9
Entrez Gene 183510 Entrez gene
SwissProt O44720 EMBL-EBI
WormBase CE36111 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB96693 Hypothetical protein C46E10.9 [Caenorhabditis elegans] ref|NP_494633.2| C46E10.9 [Caenorhabditis elegans] 0.0
blast AAK18925 Hypothetical protein F12E12.5 [Caenorhabditis elegans] ref|NP_494634.1| F12E12.5 [Caenorhabditis elegans] 3.0E-42
blast AAV28335 Hypothetical protein R08E3.4a [Caenorhabditis elegans] ref|NP_001024850.1| R08E3.4a [Caenorhabditis elegans] 3.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.3E-6
Sequence
Target Sequence 
>C. ELEGANS:190245_AT
gccagccaactcattgagctcgacgaggcaccaaactctcaccggttctaatggggtaag
gccagttaatcgccaattcaaatgtgaaatctgtgagaaacaattcgccaacaagccaaa
cttaaaccgccatcgaaaaattcattctggaacaaaatccaagaagtgcaacatttgtca
acaaacgcttcacagagagaataggctacaagagcatctgtacacacatctcaaagaacg
atctcatttcgactgccccatgctgaactgttttacgcaatttcggtctcatttggaaat
tcaacgtcatctcgagcaccaccacctcgtttcaccacacaatttggctccgtgtaggaa
atgtcgcaagcactttggaactgccaagtatttcctgattcatcactattattatcattc
tacgaatccagctcaacttcagaatccagctcaggaatgccaacactgcaagatccaatt
cgacgatgccccaatgagcctgttgcacaatgccctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCAGCCAACTCATTGAGCTCGACG 662 277 636 Antisense
ACCAAACTCTCACCGGTTCTAATGG 294 83 665 Antisense
CAAGCCAAACTTAAACCGCCATCGA 452 185 747 Antisense
AAGAACGATCTCATTTCGACTGCCC 264 153 869 Antisense
TGCCCCATGCTGAACTGTTTTACGC 227 585 889 Antisense
GTTTTACGCAATTTCGGTCTCATTT 517 447 905 Antisense
CACCTCGTTTCACCACACAATTTGG 484 201 958 Antisense
ACTGCCAAGTATTTCCTGATTCATC 436 99 1015 Antisense
TCATTCTACGAATCCAGCTCAACTT 499 619 1050 Antisense
GCAAGATCCAATTCGACGATGCCCC 291 321 1103 Antisense
AATGAGCCTGTTGCACAATGCCCTT 114 165 1128 Antisense
Sequence Source Affymetrix Proprietary Database