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[190243_at] zinc finger protein

Description F40G9.14 /REP_DB=WormBase Gene ID /WP=CE19861 /TR=Q9TZ74 /GB=AAC68803.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_total > 18      4grp_total > 25      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 3.2
(-3)
A 		10.3
(0.4)
A 		15.7
(3)
A 		15.8
(3)
A 		13
B 9.3
(-3)
A 		52.4
(3)
A 		20.5
(-1.4)
A 		9.7
(-2.9)
A 		43
C 11
(-3)
A 		11.9
(-2.9)
A 		37.2
(-0.9)
A 		86.5
(3)
A 		76
avr 7.8
(-3) 		24.9
(0.5) 		24.5
(0.4) 		37.3
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 46.8
(3)
A 		10.6
(-2.4)
A 		6.4
(-3)
A 		6.6
(-3)
A 		20.8
(-0.9)
A 		9.4
(-2.6)
A 		40
B 6.6
(-3)
A 		8
(-2.4)
A 		19.9
(3)
A 		13.3
(0)
A 		6.6
(-3)
A 		8.8
(-2)
A 		13
C 2.4
(-3)
A 		9.4
(0.9)
A 		13.3
(3)
A 		3.1
(-2.6)
A 		10.5
(1.5)
A 		6.1
(-1)
A 		11
avr 18.6
(3) 		9.3
(-2.1) 		13.2
(0) 		7.7
(-3) 		12.6
(-0.3) 		8.1
(-2.8) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1.1
(-3)
A 		2.2
(-0.8)
A 		4.1
(3)
A 		2.3
(-0.6)
A 		3
B 3
(-2.5)
A 		13
(3)
A 		4.7
(-1.6)
A 		2.1
(-3)
A 		11
C 3.7
(-2.8)
A 		3.4
(-3)
A 		13
(2.1)
A 		14.6
(3)
A 		11
avr 2.6
(-3) 		6.2
(1.6) 		7.3
(3) 		6.3
(1.7) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 8.6
(3)
A 		3.8
(-1)
A 		1.4
(-3)
A 		1.7
(-2.8)
A 		6.3
(1.1)
A 		2.3
(-2.3)
A 		7
B 2.3
(-3)
A 		2.7
(-2)
A 		4.8
(3)
A 		3.5
(-0.1)
A 		2.7
(-2)
A 		3.3
(-0.6)
A 		3
C 0.9
(-2.4)
A 		2.9
(1.9)
A 		3.4
(3)
A 		0.6
(-3)
A 		3.4
(3)
A 		2
(-0)
A 		3
avr 3.9
(2.5) 		3.1
(0.3) 		3.2
(0.5) 		1.9
(-3) 		4.1
(3) 		2.5
(-1.4) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190243_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8339
Sequence Type Exemplar sequence
Representative Public ID F40G9.14 NCBI
Target Description F40G9.14 /REP_DB=WormBase Gene ID /WP=CE19861 /TR=Q9TZ74 /GB=AAC68803.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064768(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064768 NCBI Caenorhabditis elegans F40G9.14 (F40G9.14) mRNA, complete cds. 11/11 None
F40G9.14 ENSEMBL cdna:known chromosome:CEL140:III:176271:177814:-1 gene:F40G9.14 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000021791 2/11 Cross Hyb Matching Probes None
SNAP00000021771 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:176270-177814(-) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Ensembl F40G9.14
Entrez Gene 185560 Entrez gene
SwissProt Q9TZ74 EMBL-EBI
WormBase CE19861 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC68803 Hypothetical protein F40G9.14 [Caenorhabditis elegans] ref|NP_497169.1| F40G9.14 [Caenorhabditis elegans] 1.0E-153
blast AAC68791 Hypothetical protein F40G9.12 [Caenorhabditis elegans] ref|NP_497167.1| F40G9.12 [Caenorhabditis elegans] 5.0E-32
blast AAK68897 Hypothetical protein Y54F10BM.6 [Caenorhabditis elegans] ref|NP_497528.1| Y54F10BM.6 [Caenorhabditis elegans] 4.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 5.4E-6
Sequence
Target Sequence 
>C. ELEGANS:190243_AT
agaaagcatggctgcgaacttcctcctcgctcttcgaagaacttcttcggaccatgccca
atcagatgcccagatggtatggcctgtgtcaatggtgtctgccaaggtgtgaatgctata
attactatctttgtggaatatctcgaaagggttatcaatggcgcttcggaggaggaaaaa
gaaagaaaagagcagatcaaaaaacgttaccaattagacgagtatgttgatgatgaatgt
aaaatctgttttgaaaagtatgaggtcactggaaatcgaagccctagggtttttaactgt
ggccacacgtattgtgaaagttgcattcaggtttgcaaacatcaattccaaatcaagtgc
ccgttttgcacaacaacctcataccaaattaatttctctactaacaaattaatcctagaa
gttcttaacgggaaatctaaggatacgctgagttgtaccagctgccagctgacctattct
tcacaaacgttccccagaatccatccgtcctgtggtcatagtgtct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAAGCATGGCTGCGAACTTCCTC 157 73 187 Antisense
CATGCCCAATCAGATGCCCAGATGG 444 209 239 Antisense
GTATGGCCTGTGTCAATGGTGTCTG 439 455 263 Antisense
GGTGTCTGCCAAGGTGTGAATGCTA 689 499 280 Antisense
GGGTTATCAATGGCGCTTCGGAGGA 197 493 335 Antisense
GGTCACTGGAAATCGAAGCCCTAGG 106 503 450 Antisense
TAGGGTTTTTAACTGTGGCCACACG 666 653 471 Antisense
ATCAATTCCAAATCAAGTGCCCGTT 76 27 527 Antisense
GTGCCCGTTTTGCACAACAACCTCA 173 479 543 Antisense
CGCTGAGTTGTACCAGCTGCCAGCT 682 253 632 Antisense
CATCCGTCCTGTGGTCATAGTGTCT 405 211 688 Antisense
Sequence Source Affymetrix Proprietary Database