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[190240_at] zinc finger protein

Description H10E21.5 /REP_DB=WormBase Gene ID /WP=CE19490 /TR=O76671 /GB=AAC26923.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_total > 27      4grp_total > 05      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 495
1 2 3 4 range
A 475.8
(-0.5)
P 		347.7
(-2.8)
A 		336.6
(-3)
A 		669.1
(3)
P 		333
B 522.9
(-0.4)
P 		402.5
(-2)
A 		324.6
(-3)
A 		783.3
(3)
P 		459
C 493.9
(-0.2)
P 		288.4
(-3)
M 		325.3
(-2.5)
M 		733.4
(3)
P 		445
avr 497.5
(-0.5) 		346.2
(-2.7) 		328.8
(-3) 		728.6
(3) 		400

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 332
1 2 3 4 5 6 range
A 379.1
(3)
A 		308.6
(1.3)
M 		145.9
(-2.7)
A 		236.6
(-0.5)
A 		132.9
(-3)
A 		338.1
(2)
P 		246
B 378.7
(3)
M 		251.3
(0)
A 		121.3
(-3)
A 		142.4
(-2.5)
A 		222.9
(-0.6)
A 		228.3
(-0.5)
M 		257
C 384.5
(3)
P 		217.4
(-0)
A 		195.7
(-0.4)
A 		52.3
(-3)
A 		211
(-0.1)
A 		185.1
(-0.6)
A 		332
avr 380.8
(3) 		259.1
(-0.1) 		154.3
(-2.7) 		143.8
(-3) 		188.9
(-1.9) 		250.5
(-0.3) 		237
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 173.3
(3)
P 		75.5
(-3)
A 		88
(-2.2)
A 		97.9
(-1.6)
P 		98
B 166.8
(3)
P 		99.4
(-1.4)
A 		75.2
(-3)
A 		166.9
(3)
P 		92
C 163.5
(3)
P 		82.9
(-3)
M 		113.4
(-0.7)
M 		123.7
(0)
P 		81
avr 167.9
(3) 		85.9
(-3) 		92.2
(-2.5) 		129.5
(0.2) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 132
1 2 3 4 5 6 range
A 69.9
(-0.1)
A 		109.8
(3)
M 		31.8
(-3)
A 		60
(-0.8)
A 		40.1
(-2.4)
A 		82.3
(0.9)
P 		78
B 131.8
(3)
M 		83.7
(0.2)
A 		29.5
(-3)
A 		37.7
(-2.5)
A 		90.5
(0.6)
A 		85.1
(0.3)
M 		102
C 142.5
(3)
P 		66.3
(-0.5)
A 		49.8
(-1.2)
A 		10.5
(-3)
A 		68.3
(-0.4)
A 		62
(-0.7)
A 		132
avr 114.7
(3) 		86.6
(0.9) 		37
(-2.9) 		36.1
(-3) 		66.3
(-0.7) 		76.5
(0.1) 		79
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190240_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8103
Sequence Type Exemplar sequence
Representative Public ID H10E21.5 NCBI
Target Description H10E21.5 /REP_DB=WormBase Gene ID /WP=CE19490 /TR=O76671 /GB=AAC26923.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064728(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064728 NCBI Caenorhabditis elegans H10E21.5 (H10E21.5) mRNA, complete cds. 11/11 None
SNAP00000020265 ENSEMBL cdna:SNAP chromosome:CEL140:III:20755:25531:-1 11/11 None
GENEFINDER00000020270 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:20755:23945:-1 11/11 None
H10E21.5 ENSEMBL cdna:known chromosome:CEL140:III:20534:23962:-1 gene:H10E21.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:20754-23945(-) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Ensembl H10E21.5
Entrez Gene 175169 Entrez gene
SwissProt O76671 EMBL-EBI
WormBase CE19490 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26923 Hypothetical protein H10E21.5 [Caenorhabditis elegans] ref|NP_497129.1| H10E21.5 [Caenorhabditis elegans] 0.0
blast CAE69192 Hypothetical protein CBG15229 [Caenorhabditis briggsae] 1.0E-169
blast EAL41047 ENSANGP00000027122 [Anopheles gambiae str. PEST] ref|XP_559104.1| ENSANGP00000027122 [Anopheles gambiae str. PEST] 1.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 2.4E-12
Pfam IPR001841 EMBL-EBI Zn-finger, RING 2.4E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497129.1 1 161-183
H10E21.5 1 161-183
SNAP00000020265 2 20-39,180-202
GENEFINDER00000020270 1 161-183
Sequence
Target Sequence 
>C. ELEGANS:190240_AT
gccaacaaactccaggggcatcgccgacgactttacgattcggttggagctcggcgagca
ggagcaccaagccccctctgctgacgtcatcagtcccgaggcgaattcagacacctcgga
ctcgcaaggcttctcgttcgataattcagagcatcaccactcggaaagttttggctacgg
tacctcctctacagtaccaccgcagttggtgctcaatgcctcgaacgccaagagctttgt
gatgcctctatcatctcggggggtatcccaggggccacaggcttccagggatttcagatc
ggctagagctccccgggatcatagagccagcttgcatgagctcccaaggcctcagacttc
agctgcgtcacagggacaaatcgtcaatttagtgcaggtaaaatcccgctcggcttccat
cacccgttcagcagctaccatccgaaaggagagcctcccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCAACAAACTCCAGGGGCATCGCC 253 277 873 Antisense
TACGATTCGGTTGGAGCTCGGCGAG 356 625 906 Antisense
TCATCAGTCCCGAGGCGAATTCAGA 646 619 959 Antisense
ACTCGCAAGGCTTCTCGTTCGATAA 284 99 992 Antisense
GTACCACCGCAGTTGGTGCTCAATG 26 459 1066 Antisense
AATGCCTCGAACGCCAAGAGCTTTG 581 165 1087 Antisense
GCTTTGTGATGCCTCTATCATCTCG 100 305 1106 Antisense
GCCACAGGCTTCCAGGGATTTCAGA 587 277 1146 Antisense
GATTTCAGATCGGCTAGAGCTCCCC 491 427 1162 Antisense
TAGAGCCAGCTTGCATGAGCTCCCA 296 651 1194 Antisense
TACCATCCGAAAGGAGAGCCTCCCC 81 651 1308 Antisense
Sequence Source Affymetrix Proprietary Database