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[190237_at] zinc finger protein

Description R11G11.1 /REP_DB=WormBase Gene ID /WP=CE12740 /TR=O16961 /GB=AAC69076.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_high1_10_10 > 30      6grp_total > 42      4grp_total > 23      6grp_cgc > 81      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 191.1
(3)
P 		89
(-3)
A 		99.7
(-2.4)
A 		191
(3)
P 		102
B 158.4
(2.3)
P 		84.3
(-2.3)
A 		72.4
(-3)
A 		169.5
(3)
A 		97
C 225
(3)
P 		92.3
(-3)
A 		105
(-2.4)
A 		160.3
(0.1)
P 		133
avr 191.5
(3) 		88.5
(-3) 		92.4
(-2.8) 		173.6
(2) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 123
1 2 3 4 5 6 range
A 151.1
(1.2)
P 		167.6
(3)
M 		146
(0.7)
P 		152.8
(1.4)
P 		112.2
(-3)
A 		122.5
(-1.9)
A 		55
B 201.1
(1.2)
P 		138.6
(-2.4)
A 		231
(3)
P 		172.7
(-0.4)
A 		147.4
(-1.9)
P 		128.6
(-3)
P 		102
C 150.9
(-1.7)
P 		152
(-1.7)
P 		234.7
(3)
P 		164.5
(-1)
A 		137.6
(-2.5)
M 		128.1
(-3)
P 		107
avr 167.7
(0.2) 		152.7
(-1) 		203.9
(3) 		163.3
(-0.1) 		132.4
(-2.5) 		126.4
(-3) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 69.6
(3)
P 		19.3
(-3)
A 		26.1
(-2.2)
A 		28
(-2)
P 		50
B 50.5
(3)
P 		20.8
(-2.3)
A 		16.8
(-3)
A 		36.1
(0.4)
A 		34
C 74.5
(3)
P 		26.5
(-3)
A 		36.6
(-1.7)
A 		27
(-2.9)
P 		48
avr 64.9
(3) 		22.2
(-3) 		26.5
(-2.4) 		30.4
(-1.8) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 27.9
(-3)
P 		59.6
(3)
M 		31.8
(-2.3)
P 		38.8
(-0.9)
P 		33.9
(-1.9)
A 		29.8
(-2.6)
A 		32
B 70
(3)
P 		46.1
(-2.9)
A 		56.1
(-0.4)
P 		45.7
(-3)
A 		59.9
(0.5)
P 		48
(-2.4)
P 		24
C 55.9
(2.1)
P 		46.4
(-0)
P 		59.7
(3)
P 		33.1
(-3)
A 		44.5
(-0.4)
M 		42.9
(-0.8)
P 		27
avr 51.3
(3) 		50.7
(2.7) 		49.2
(2) 		39.2
(-3) 		46.1
(0.4) 		40.2
(-2.5) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190237_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15551
Sequence Type Exemplar sequence
Representative Public ID R11G11.1 NCBI
Target Description R11G11.1 /REP_DB=WormBase Gene ID /WP=CE12740 /TR=O16961 /GB=AAC69076.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070836(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070836 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-132) (nhr-132) mRNA, complete cds. 10/11 None
SNAP00000021492 ENSEMBL cdna:SNAP chromosome:CEL140:V:532462:535843:1 10/11 None
GENEFINDER00000021495 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:534346:535974:1 11/11 None
R11G11.1 ENSEMBL cdna:known chromosome:CEL140:V:534297:536055:1 gene:R11G11.1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:534345-535996(+) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Gene Symbol nhr-132
Ensembl R11G11.1
Entrez Gene 187822 Entrez gene
SwissProt O16961 EMBL-EBI
WormBase CE33297 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503237 Nuclear Hormone Receptor family member (nhr-132) [Caenorhabditis elegans] gb|AAC69076.2| Nuclear hormone receptor family protein 132 [Caenorhabditis elegans] 1.0E-158
blast AAG15155 nuclear receptor NHR-58 [Caenorhabditis elegans] 1.0E-148
blast NP_001024080 Nuclear Hormone Receptor family member (nhr-58) [Caenorhabditis elegans] gb|AAO26008.1| Nuclear hormone receptor family protein 58, isoform b [Caenorhabditis elegans] 1.0E-148
blast NP_503236 Nuclear Hormone Receptor family member (nhr-58) [Caenorhabditis elegans] gb|AAC69077.1| Nuclear hormone receptor family protein 58, isoform a [Caenorhabditis elegans] 1.0E-148
blast AAG15155 nuclear receptor NHR-58 [Caenorhabditis elegans] 1.0E-92
blast NP_503236 Nuclear Hormone Receptor family member (nhr-58) [Caenorhabditis elegans] gb|AAC69077.1| Nuclear hormone receptor family protein 58, isoform a [Caenorhabditis elegans] 1.0E-92
blast CAE65496 Hypothetical protein CBG10466 [Caenorhabditis briggsae] 1.0E-66
Protein Domains
Database ID Description E-Value
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.7E-8
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 2.4E-7
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 6.7E-4
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 2.4E-7
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 1.2E-4
Sequence
Target Sequence 
>C. ELEGANS:190237_AT
ggcacggtggctgacgtatttcgacgagtttcagaagttggaccacaaaattcagatgac
ccttctcctcgcaatctggcacgtttggggacgacttgacaagcttctggcaactgcaat
aaatcggagacgcggcttgtgtcctacaaaaaacctgttgactctgagcaatggggtttt
catcgatatggagcatcaagaagttgatgtagattggatgaccaattacgagccggagca
agttttgaccttcatagacggagtgcgcgcccgagagctcaccaaagaaatcgacccttt
agtagagcttgagccatctgacattgaatccgcctacatgcttgcccaactctgcttcca
ctacgcaggaaaacgatttgctggtgaaatccaagaaatttgtgatcaccttcaagacgt
tcttgctcaaaacctacatgaatattaccaaaatgagaagaaaattgatcgatactcggg
aagactggcgaagctaataaagattaatggagcagttcagaaaaacatttgggaaaatcg
atcaaaaatcaaaatttccaagacttttgacatgctctccatag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCACGGTGGCTGACGTATTTCGAC 354 535 591 Antisense
CAAAATTCAGATGACCCTTCTCCTC 693 189 636 Antisense
CCTCGCAATCTGGCACGTTTGGGGA 440 265 657 Antisense
GACTTGACAAGCTTCTGGCAACTGC 700 369 683 Antisense
AAATCGGAGACGCGGCTTGTGTCCT 192 117 711 Antisense
GAGCCGGAGCAAGTTTTGACCTTCA 682 385 820 Antisense
GACCTTCATAGACGGAGTGCGCGCC 185 383 837 Antisense
TCGACCCTTTAGTAGAGCTTGAGCC 677 601 881 Antisense
TGAGCCATCTGACATTGAATCCGCC 527 569 900 Antisense
AGACGTTCTTGCTCAAAACCTACAT 408 71 1005 Antisense
AAGACTTTTGACATGCTCTCCATAG 243 153 1150 Antisense
Sequence Source Affymetrix Proprietary Database