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[190236_s_at]

Description H10E21.3 /REP_DB=WormBase Gene ID /WP=CE19488 /TR=O76668 /GB=AAC26921.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 13      4grp_highest_8_8 > 25      4grp_high_8_8 > 60      6grp_highest_nonorm > 80      6grp_total > 24      4grp_total > 60      6grp_highest_sub > De      6grp_cgc > 30      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 215
1 2 3 4 range
A 197.7
(0.7)
P 		219.9
(1.7)
P 		247.8
(3)
P 		115
(-3)
P 		133
B 258
(0.8)
P 		243.3
(0.3)
P 		330.4
(3)
P 		133.6
(-3)
P 		197
C 234.2
(1.6)
P 		262.5
(3)
P 		203.4
(-0)
P 		144.6
(-3)
P 		118
avr 230
(1.6) 		241.9
(2.1) 		260.5
(3) 		131.1
(-3) 		129

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 211.2
(-0.2)
P 		268.1
(3)
P 		239.5
(1.4)
P 		210.4
(-0.2)
P 		160.7
(-3)
P 		210
(-0.2)
P 		107
B 255
(3)
P 		223.3
(-0.3)
P 		215
(-1.1)
P 		253.4
(2.8)
P 		234.8
(0.9)
P 		196.8
(-3)
P 		58
C 260.2
(3)
P 		243
(0.7)
P 		231.1
(-0.9)
P 		231.1
(-0.9)
P 		215.1
(-3)
P 		242.6
(0.7)
P 		45
avr 242.1
(2.6) 		244.8
(3) 		228.5
(0.6) 		231.6
(1.1) 		203.5
(-3) 		216.5
(-1.1) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 72
(3)
P 		47.7
(0.4)
P 		64.8
(2.2)
P 		16.8
(-3)
P 		55
B 82.3
(3)
P 		60.1
(0.5)
P 		76.6
(2.4)
P 		28.5
(-3)
P 		54
C 77.5
(3)
P 		75.5
(2.8)
P 		70.9
(2.3)
P 		24.4
(-3)
P 		53
avr 77.3
(3) 		61.1
(1.2) 		70.8
(2.3) 		23.2
(-3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 38.9
(-3)
P 		95.3
(3)
P 		52.2
(-1.6)
P 		53.4
(-1.5)
P 		48.5
(-2)
P 		51.1
(-1.7)
P 		56
B 88.7
(2.1)
P 		74.3
(0.1)
P 		52.2
(-3)
P 		67.1
(-0.9)
P 		95.4
(3)
P 		73.4
(-0.1)
P 		43
C 96.4
(3)
P 		74.1
(0.3)
P 		58.8
(-1.5)
P 		46.5
(-3)
P 		69.6
(-0.2)
P 		81.2
(1.2)
P 		50
avr 74.7
(1.5) 		81.2
(3) 		54.4
(-3) 		55.7
(-2.7) 		71.2
(0.8) 		68.6
(0.2) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190236_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8323
Sequence Type Exemplar sequence
Representative Public ID H10E21.3 NCBI
Target Description H10E21.3 /REP_DB=WormBase Gene ID /WP=CE19488 /TR=O76668 /GB=AAC26921.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064725(11), NM_181901(11), AF332209(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064725 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-80) (nhr-80) mRNA, complete cds. 11/11 None
NM_181901 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-80) (nhr-80) mRNA, complete cds. 11/11 None
AF332209 NCBI Caenorhabditis elegans clone yk662g7 nuclear receptor NHR-80 gene, partial cds. 11/11 None
GENEFINDER00000020269 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12189:14081:-1 11/11 None
H10E21.3a ENSEMBL cdna:known chromosome:CEL140:III:12164:14801:-1 gene:H10E21.3 11/11 None
H10E21.3b ENSEMBL cdna:known chromosome:CEL140:III:12189:14753:-1 gene:H10E21.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020262 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12188-14753(-) 100.0 100.0
Public Domain and Genome References
Ensembl H10E21.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK82901 Nuclear hormone receptor family protein 80, isoform a [Caenorhabditis elegans] ref|NP_497126.1| Nuclear Hormone Receptor family member (nhr-80) [Caenorhabditis elegans] gb|AAO39183.1| nuclear receptor NHR-80 [Caenorhabditis elegans] 0.0
blast AAN63404 Nuclear hormone receptor family protein 80, isoform b [Caenorhabditis elegans] ref|NP_871630.1| Nuclear Hormone Receptor family member (nhr-80) [Caenorhabditis elegans] 0.0
blast CAE69521 Hypothetical protein CBG15730 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 3.1E-35
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 3.1E-35
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 4.0E-18
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 3.1E-35
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 4.0E-18
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 3.1E-35
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 2.3E-7
Sequence
Target Sequence 
>C. ELEGANS:190236_S_AT
ctacttgatccatccttcttatcatatcaaatcggtgaacctgataagctgataatgcag
aacgggggcttcatatcaacagcggaccatcatggagttggctgggaggatgagacggat
atcagtggggagaataagagaaagtactatgttccaattatgaaacaaatcaccgacgag
atcatgcctgcgatggaagctatgaagatcacttttgaggaatttgtggcgctgaaggcg
ctggcgtgctttcaagggggtttcgaaaacgtgtcagaggcgaaacgtcacctaatcacc
caacaagttaacaggataatgacgtcactacacacccattatcttgaaaattccgaagaa
aaaatcgcggagaggtttggaaccattgtgctcatgctgagcaatatatttactgccggc
aatgattttgtgcaaaatcacagagaaatcgatattttccacatttgggatctggacaag
ctggtgctccagctgctcaacctcgacaaaattatggagacagaagccagggagactgcc
gagaaacgggcgatgcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTACTTGATCCATCCTTCTTATCAT 127 227 904 Antisense
GGGGGCTTCATATCAACAGCGGACC 74 495 967 Antisense
AAATCACCGACGAGATCATGCCTGC 61 117 1070 Antisense
TTGTGGCGCTGAAGGCGCTGGCGTG 668 707 1127 Antisense
TGGCGTGCTTTCAAGGGGGTTTCGA 192 535 1145 Antisense
AGAGGCGAAACGTCACCTAATCACC 288 67 1179 Antisense
GGATAATGACGTCACTACACACCCA 51 509 1217 Antisense
GGTTTGGAACCATTGTGCTCATGCT 417 505 1277 Antisense
GGGATCTGGACAAGCTGGTGCTCCA 105 497 1370 Antisense
GACAGAAGCCAGGGAGACTGCCGAG 706 367 1422 Antisense
GACTGCCGAGAAACGGGCGATGCGG 606 371 1437 Antisense
Sequence Source Affymetrix Proprietary Database