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[190234_at]

Description R10H1.1 /REP_DB=WormBase Gene ID /WP=CE02028 /TR=SW:Q10043 /GB=AAC46709.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=trypsin inhibitor
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 98      4grp_highest_8_8 > 15      4grp_high_8_8 > 06      6grp_highest_nonorm > 79      6grp_total > 96      4grp_total > 02      6grp_highest_sub > In      6grp_cgc > 78      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9060
1 2 3 4 range
A 697.4
(-3)
P 		1217
(-2.7)
P 		958
(-2.8)
P 		9757.8
(3)
P 		9060
B 837
(-3)
P 		1187.9
(-2.7)
P 		1040.4
(-2.8)
P 		7325.3
(3)
P 		6488
C 766.9
(-3)
P 		1239.3
(-2.5)
P 		1032.6
(-2.7)
P 		5931
(3)
P 		5164
avr 767.1
(-3) 		1214.7
(-2.6) 		1010.3
(-2.8) 		7671.4
(3) 		6904

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2154
1 2 3 4 5 6 range
A 1662.5
(-0.2)
P 		965.1
(-3)
P 		1269
(-1.8)
P 		1868.8
(0.7)
P 		2441.8
(3)
P 		2380.1
(2.7)
P 		1477
B 1119.3
(-2.5)
P 		923.7
(-3)
P 		1038.9
(-2.7)
P 		1717.9
(-0.8)
P 		2254.5
(0.7)
P 		3061.6
(3)
P 		2138
C 1160.8
(-2.6)
P 		1013.6
(-3)
P 		1072.6
(-2.8)
P 		1568.1
(-1.4)
P 		2353.7
(0.9)
P 		3077.6
(3)
P 		2064
avr 1314.2
(-1.9) 		967.5
(-3) 		1126.8
(-2.5) 		1718.3
(-0.6) 		2350
(1.4) 		2839.8
(3) 		1872
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1320
1 2 3 4 range
A 253.9
(-3)
P 		264.2
(-2.9)
P 		250.4
(-3)
P 		1428.4
(3)
P 		1178
B 266.9
(-2.9)
P 		293.4
(-2.8)
P 		241.1
(-3)
P 		1561
(3)
P 		1320
C 253.9
(-3)
P 		356.3
(-2.2)
P 		359.9
(-2.1)
P 		1000.1
(3)
P 		746
avr 258.2
(-3) 		304.6
(-2.7) 		283.8
(-2.9) 		1329.8
(3) 		1072

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 889
1 2 3 4 5 6 range
A 306.5
(-2.6)
P 		343.2
(-2.1)
P 		276.4
(-3)
P 		474
(-0.4)
P 		736.8
(3)
P 		579.5
(1)
P 		460
B 389.4
(-2.1)
P 		307.5
(-2.6)
P 		252.3
(-3)
P 		455
(-1.6)
P 		916
(1.5)
P 		1141.6
(3)
P 		889
C 430.3
(-1.8)
P 		309.3
(-2.7)
P 		273
(-3)
P 		315.4
(-2.7)
P 		761.6
(0.9)
P 		1030.2
(3)
P 		757
avr 375.4
(-2) 		320
(-2.5) 		267.2
(-3) 		414.8
(-1.6) 		804.8
(2) 		917.1
(3) 		650
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190234_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4403
Sequence Type Exemplar sequence
Representative Public ID R10H1.1 NCBI
Target Description R10H1.1 /REP_DB=WormBase Gene ID /WP=CE02028 /TR=SW:Q10043 /GB=AAC46709.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=trypsin inhibitor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063167, NM_182250
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000033730 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7494636:7497205:1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_063167 4/11 Cross Hyb Matching Probes None
NM_182250 3/11 Cross Hyb Matching Probes None
SNAP00000033724 2/11 Cross Hyb Matching Probes None
SNAP00000033725 3/11 Cross Hyb Matching Probes None
R10H1.1 4/11 Cross Hyb Matching Probes None
R10H1.4 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7494632-7497202(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T16709 hypothetical protein R10H1.1 - Caenorhabditis elegans 0.0
blast CAE67523 Hypothetical protein CBG13044 [Caenorhabditis briggsae] 1.0E-120
blast NP_495568 R10H1.1 [Caenorhabditis elegans] gb|AAM97991.1| Hypothetical protein R10H1.1 [Caenorhabditis elegans] sp|Q10043|YRP1_CAEEL Hypothetical protein R10H1.1 in chromosome II 7.0E-76
Protein Domains
Database ID Description E-Value
Pfam IPR002919 EMBL-EBI Trypsin inhibitor-like, cysteine-rich TIL region 9.5E-9
Sequence
Target Sequence 
>C. ELEGANS:190234_AT
acaagaatcttcagctactcctgctccatcaagacattctggagatttgatttcattcga
ggatcaggtactaaataccacaacttatgtgactgaagtccaatacaataacatggctaa
ccgttttctaggtttgtgcataacgcttgtttttgtttttagccacaacagtcatccaac
acaacaacatcatcatcttgtcaatcggctaataactcataaatcatgtcaactttcgct
ttcattggtcactgatatgcgctcttttcaatgtgtaatttctttaatgaacacatattc
ttgttggttttgcaaaagtacttttaaaaagggaaatgaaaataaggtcaatactatcat
ctggaaaatagaatgtgaaactgatatgtatgatgattcatcaattgttaaaacagagga
aactgaggaagtgaagccatgtggattaaatgaagtttggatggtttgttcatcatgtga
agaagaatgtggtaaaacacctcaaccatgtccaagaatctgccaaccggcacgttgtca
atgtccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAAGAATCTTCAGCTACTCCTGCT 700 113 372 Antisense
CTCCTGCTCCATCAAGACATTCTGG 439 235 389 Antisense
ATAACATGGCTAACCGTTTTCTAGG 49 25 479 Antisense
TTTAGCCACAACAGTCATCCAACAC 199 673 529 Antisense
CATCATCATCTTGTCAATCGGCTAA 499 213 559 Antisense
TAAATCATGTCAACTTTCGCTTTCA 517 641 591 Antisense
CTTTCGCTTTCATTGGTCACTGATA 492 223 604 Antisense
GTCACTGATATGCGCTCTTTTCAAT 198 465 619 Antisense
TAAAACACCTCAACCATGTCCAAGA 8 641 864 Antisense
TGTCCAAGAATCTGCCAACCGGCAC 609 555 880 Antisense
CAACCGGCACGTTGTCAATGTCCAG 218 185 895 Antisense
Sequence Source Affymetrix Proprietary Database