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[190232_s_at]

Description C13G3.3A /REP_DB=WormBase Gene ID /WP=CE05279 /TR=Q17948 /GB=CAA98422.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=proteion phosphatase
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 29      4grp_highest_8_8 > 57      4grp_high_8_8 > 34      6grp_highest_nonorm > 76      6grp_total > 28      4grp_total > 46      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 749
1 2 3 4 range
A 1840.7
(3)
P 		1352.4
(-2.2)
P 		1280.7
(-3)
P 		1326.1
(-2.5)
P 		560
B 1904.4
(3)
P 		1519.5
(-0.3)
P 		1325.9
(-2)
P 		1208.6
(-3)
P 		696
C 1957.2
(3)
P 		1588.1
(-0.2)
P 		1268.6
(-3)
P 		1267.1
(-3)
P 		690
avr 1900.8
(3) 		1486.7
(-0.9) 		1291.7
(-2.8) 		1267.3
(-3) 		634

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 629
1 2 3 4 5 6 range
A 1503.8
(3)
P 		1340.2
(1.2)
P 		972.1
(-3)
P 		1028.9
(-2.4)
P 		1221
(-0.2)
P 		1303.7
(0.7)
P 		532
B 1350.7
(3)
P 		1144
(0.1)
P 		930.2
(-3)
P 		1128.2
(-0.2)
P 		1061.5
(-1.1)
P 		1015.6
(-1.8)
P 		421
C 1214.1
(2.2)
P 		1074
(0)
P 		1269.7
(3)
P 		874.4
(-3)
P 		1112
(0.6)
P 		1093.3
(0.3)
P 		395
avr 1356.2
(3) 		1186.1
(0) 		1057.3
(-2.2) 		1010.5
(-3) 		1131.5
(-0.9) 		1137.5
(-0.8) 		346
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 476
1 2 3 4 range
A 670.2
(3)
P 		293.6
(-1.7)
P 		334.8
(-1.2)
P 		194.1
(-3)
P 		476
B 607.3
(3)
P 		375.3
(-1)
P 		307.2
(-2.1)
P 		257.6
(-3)
P 		350
C 647.9
(3)
P 		456.6
(0.4)
P 		442.2
(0.2)
P 		213.7
(-3)
P 		434
avr 641.8
(3) 		375.2
(-0.8) 		361.4
(-1) 		221.8
(-3) 		420

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 301
1 2 3 4 5 6 range
A 277.2
(-1.5)
P 		476.7
(3)
P 		211.7
(-3)
P 		261
(-1.9)
P 		368.5
(0.6)
P 		317.4
(-0.6)
P 		265
B 470
(3)
P 		380.8
(0.8)
P 		225.9
(-3)
P 		298.8
(-1.2)
P 		431.3
(2)
P 		378.7
(0.8)
P 		244
C 450
(3)
P 		327.7
(0.3)
P 		323.1
(0.2)
P 		175.8
(-3)
P 		359.8
(1)
P 		366
(1.2)
P 		274
avr 399.1
(3) 		395.1
(2.8) 		253.6
(-2.7) 		245.2
(-3) 		386.5
(2.5) 		354
(1.2) 		154
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190232_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13942
Sequence Type Exemplar sequence
Representative Public ID C13G3.3A NCBI
Target Description C13G3.3A /REP_DB=WormBase Gene ID /WP=CE05279 /TR=Q17948 /GB=CAA98422.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=proteion phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073407(11), NM_073406(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073407 NCBI Caenorhabditis elegans C13G3.3a (C13G3.3) mRNA, complete cds. 11/11 None
NM_073406 NCBI Caenorhabditis elegans C13G3.3b (C13G3.3) mRNA, complete cds. 11/11 None
SNAP00000001343 ENSEMBL cdna:SNAP chromosome:CEL140:V:11030101:11031970:-1 11/11 None
GENEFINDER00000001347 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11030101:11033433:-1 11/11 None
C13G3.3a.2 ENSEMBL cdna:known chromosome:CEL140:V:11029770:11033433:-1 gene:C13G3.3 11/11 A 
C13G3.3a.1 ENSEMBL cdna:known chromosome:CEL140:V:11029770:11031975:-1 gene:C13G3.3 11/11 A 
C13G3.3a.3 ENSEMBL cdna:known chromosome:CEL140:V:11029770:11031977:-1 gene:C13G3.3 11/11 None
C13G3.3b.1 ENSEMBL cdna:known chromosome:CEL140:V:11030101:11032296:-1 gene:C13G3.3 11/11 None
C13G3.3b.2 ENSEMBL cdna:known chromosome:CEL140:V:11030101:11031983:-1 gene:C13G3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11030100-11031970(-) 100.0 100.0
Public Domain and Genome References
Ensembl C13G3.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98422 Hypothetical protein C13G3.3a [Caenorhabditis elegans] ref|NP_505808.1| C13G3.3a [Caenorhabditis elegans] 0.0
blast CAA98423 Hypothetical protein C13G3.3b [Caenorhabditis elegans] ref|NP_505807.1| C13G3.3b [Caenorhabditis elegans] 0.0
blast CAE75145 Hypothetical protein CBG23076 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002554 EMBL-EBI Protein phosphatase 2A, regulatory B subunit, B56 1.0E-126
Pfam IPR002554 EMBL-EBI Protein phosphatase 2A, regulatory B subunit, B56 1.0E-126
Pfam IPR002554 EMBL-EBI Protein phosphatase 2A, regulatory B subunit, B56 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:190232_S_AT
ttgctcgctgtgtcagcagtccacacttccaagttgccgaacgagctctctactattgga
ataatgaatatgtgatgtcattagtagcggacaatgctcgtgtgataattccaataatgt
tccctgttcttttcaaaaacagcaagtcacattggaataaaacgattcatggacttatct
acaacgccctcaagatgttcatggaaatgaatcaaaaactgtttgacgagtgttcccaag
cttatcagaaagatcgagttcaagaaaagacattgaatgaagaaaaagaacgcatctgga
acaatattgagaaacaggcaatgggaaacccgcaatatgttgaagttaaagcactatttg
ctcgatttaatccagatgaaatcatcagctcgcgtcagcagaatggagttgacgagaata
tgaagacttcaactgtgcttagcaaggatgaaattctgaaaaatgctgtaggagtgagct
cgatgaaaaacgatatggatttcggacccaaccacaaacaatccgatttccctccagatg
agcaaacgacgagagctttaggcgagtacaagcgtcacgatccatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCTCGCTGTGTCAGCAGTCCACA 241 701 1067 Antisense
TCCACACTTCCAAGTTGCCGAACGA 93 589 1086 Antisense
TGCCGAACGAGCTCTCTACTATTGG 485 583 1101 Antisense
TCCAATAATGTTCCCTGTTCTTTTC 304 587 1176 Antisense
TTCATGGACTTATCTACAACGCCCT 339 685 1232 Antisense
ACAACGCCCTCAAGATGTTCATGGA 683 111 1247 Antisense
TGACGAGTGTTCCCAAGCTTATCAG 347 571 1290 Antisense
TGAAATCATCAGCTCGCGTCAGCAG 151 573 1443 Antisense
GATATGGATTTCGGACCCAACCACA 491 423 1558 Antisense
TCCGATTTCCCTCCAGATGAGCAAA 435 595 1588 Antisense
GCGAGTACAAGCGTCACGATCCATT 74 289 1628 Antisense
Sequence Source Affymetrix Proprietary Database