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[190230_at] DNA-binding protein

Description F19F10.5 /REP_DB=WormBase Gene ID /WP=CE09485 /TR=O01519 /GB=AAB52283.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=DNA-binding protein
Cluster 6grp_total > 76      4grp_total > 04      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 23.5
(2.2)
A 		8.8
(-3)
A 		25.8
(3)
A 		18.4
(0.4)
A 		17
B 38.4
(3)
A 		30.7
(1.2)
A 		12.2
(-3)
A 		20.7
(-1.1)
A 		26
C 2.6
(-3)
A 		3.2
(-3)
A 		4.1
(-2.9)
A 		77.6
(3)
A 		75
avr 21.5
(-1.2) 		14.2
(-3) 		14
(-3) 		38.9
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 6.4
(-3)
A 		11
(-2.4)
A 		26.1
(-0.5)
A 		15.2
(-1.9)
A 		46
(2.1)
A 		52.8
(3)
A 		46
B 38.5
(0.9)
A 		38.2
(0.9)
A 		27.7
(-1.1)
A 		29.1
(-0.9)
A 		17.7
(-3)
A 		49.6
(3)
A 		32
C 16.4
(-2.2)
A 		9.3
(-3)
A 		13.1
(-2.6)
A 		61.2
(3)
A 		17.1
(-2.1)
A 		45.3
(1.2)
A 		52
avr 20.4
(-2.8) 		19.5
(-3) 		22.3
(-2.4) 		35.2
(0.2) 		26.9
(-1.5) 		49.2
(3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 8.5
(3)
A 		1.9
(-3)
A 		6.8
(1.5)
A 		2.7
(-2.3)
A 		7
B 12.3
(3)
A 		7.6
(0)
A 		2.8
(-3)
A 		4.4
(-2)
A 		10
C 0.9
(-3)
A 		0.9
(-3)
A 		1.4
(-2.8)
A 		13.1
(3)
A 		12
avr 7.2
(3) 		3.5
(-3) 		3.7
(-2.7) 		6.7
(2.2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 1.2
(-3)
A 		3.9
(-1.7)
A 		5.7
(-0.9)
A 		3.9
(-1.7)
A 		13.9
(3)
A 		12.9
(2.5)
A 		13
B 13.4
(0.4)
A 		12.7
(0.1)
A 		6.7
(-3)
A 		7.7
(-2.5)
A 		7.2
(-2.7)
A 		18.5
(3)
A 		12
C 6.1
(-1.4)
A 		2.8
(-3)
A 		3.3
(-2.8)
A 		12.3
(1.6)
A 		5.5
(-1.7)
A 		15.2
(3)
A 		12
avr 6.9
(-2) 		6.5
(-2.2) 		5.2
(-3) 		8
(-1.4) 		8.9
(-0.8) 		15.5
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190230_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11678
Sequence Type Exemplar sequence
Representative Public ID F19F10.5 NCBI
Target Description F19F10.5 /REP_DB=WormBase Gene ID /WP=CE09485 /TR=O01519 /GB=AAB52283.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=DNA-binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072546(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072546 NCBI Caenorhabditis elegans F19F10.5 (F19F10.5) mRNA, complete cds. 11/11 None
SNAP00000016028 ENSEMBL cdna:SNAP chromosome:CEL140:V:7560349:7561375:-1 10/11 None
GENEFINDER00000016043 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7560349:7564045:-1 11/11 None
F19F10.5 ENSEMBL cdna:known chromosome:CEL140:V:7560349:7561806:-1 gene:F19F10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7560349-7561807(-) 100.0 100.0
Public Domain and Genome References
Gene Title DNA-binding protein
Ensembl F19F10.5
Entrez Gene 184687 Entrez gene
SwissProt O01519 EMBL-EBI
WormBase CE09485 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52283 Hypothetical protein F19F10.5 [Caenorhabditis elegans] ref|NP_504947.1| F19F10.5 [Caenorhabditis elegans] 1.0E-148
blast AAB52283 Hypothetical protein F19F10.5 [Caenorhabditis elegans] ref|NP_504947.1| F19F10.5 [Caenorhabditis elegans] 1.0E-112
blast AAB52283 Hypothetical protein F19F10.5 [Caenorhabditis elegans] ref|NP_504947.1| F19F10.5 [Caenorhabditis elegans] 9.0E-98
blast AAB52284 Hypothetical protein F19F10.6 [Caenorhabditis elegans] ref|NP_504948.1| F19F10.6 [Caenorhabditis elegans] 5.0E-59
blast AAB52279 Hypothetical protein F19F10.1 [Caenorhabditis elegans] ref|NP_504949.1| F19F10.1 [Caenorhabditis elegans] 6.0E-43
blast AAB52279 Hypothetical protein F19F10.1 [Caenorhabditis elegans] ref|NP_504949.1| F19F10.1 [Caenorhabditis elegans] 4.0E-40
blast AAB52279 Hypothetical protein F19F10.1 [Caenorhabditis elegans] ref|NP_504949.1| F19F10.1 [Caenorhabditis elegans] 7.0E-37
blast CAE57811 Hypothetical protein CBG00835 [Caenorhabditis briggsae] 1.0E-28
Protein Domains
Database ID Description E-Value
Pfam IPR000418 EMBL-EBI Ets-domain 1.3E-23
Pfam IPR000418 EMBL-EBI Ets-domain 8.1E-26
Pfam IPR000418 EMBL-EBI Ets-domain 1.2E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504947.1 1 21-43
F19F10.5 1 21-43
GENEFINDER00000016043 2 105-122,158-180
Sequence
Target Sequence 
>C. ELEGANS:190230_AT
cccactgtaccctcataattttttgcaggttaaagggaaagactctcgttactgtttcct
agataccccattacttgcaccatttcccgatttcttcccgaaagccaatgaacctatgag
acgagtgccgctgtttagcattgaaaatcttctagcgagctctgaagaaactacgtcgaa
tttcagccttcaatcttcaccgagctcaagctctaactcatcatcagcacgaacgatgtc
tgcaacctcatcgccaacttcttctttggaagacgttatcaatcctccagttctcataga
tccatttcaaatgcagatggctcacatcacccaaaccttcctggcaactcagttac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCACTGTACCCTCATAATTTTTTG 483 257 519 Antisense
GAAAGACTCTCGTTACTGTTTCCTA 266 359 555 Antisense
TTACTGTTTCCTAGATACCCCATTA 356 681 567 Antisense
GAACCTATGAGACGAGTGCCGCTGT 355 345 628 Antisense
CGAATTTCAGCCTTCAATCTTCACC 662 253 695 Antisense
GAGCTCAAGCTCTAACTCATCATCA 30 389 720 Antisense
GCACGAACGATGTCTGCAACCTCAT 466 315 745 Antisense
TCATCGCCAACTTCTTCTTTGGAAG 306 621 766 Antisense
GAAGACGTTATCAATCCTCCAGTTC 558 339 787 Antisense
AATCCTCCAGTTCTCATAGATCCAT 417 165 799 Antisense
CAAACCTTCCTGGCAACTCAGTTAC 527 191 850 Antisense
Sequence Source Affymetrix Proprietary Database