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[190228_s_at] band 4.1-like domain

Description T04C9.6 /REP_DB=WormBase Gene ID /WP=CE04881 /TR=Q9GP93 /GB=AAG01559.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=band 4.1-like domain
Cluster 6grp_highest_10_10 > 01      6grp_high1_10_10 > 0      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 74      6grp_total > 50      4grp_total > 22      6grp_cgc > 94      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 219
1 2 3 4 range
A 799
(2.6)
P 		631.3
(-2)
P 		594.6
(-3)
P 		813.6
(3)
P 		219
B 752.8
(1.7)
P 		682.3
(-0.6)
P 		607.8
(-3)
P 		791.2
(3)
P 		183
C 768.6
(3)
P 		689.4
(-0.2)
P 		619.4
(-3)
P 		747.9
(2.2)
P 		149
avr 773.5
(2.6) 		667.7
(-1) 		607.3
(-3) 		784.2
(3) 		177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 279
1 2 3 4 5 6 range
A 945.7
(3)
P 		688.7
(-3)
P 		846.9
(0.7)
P 		733
(-2)
P 		810.4
(-0.2)
P 		736
(-1.9)
P 		257
B 782.8
(-0.1)
P 		793
(0.3)
P 		853.1
(2.6)
P 		863.7
(3)
P 		731.1
(-2.1)
P 		708.8
(-3)
P 		155
C 760.5
(-0.6)
P 		748.3
(-0.9)
P 		716.9
(-1.7)
P 		901.9
(3)
P 		666.5
(-3)
P 		732
(-1.3)
P 		235
avr 829.7
(2.8) 		743.3
(-2) 		805.6
(1.5) 		832.9
(3) 		736
(-2.4) 		725.6
(-3) 		107
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 172
1 2 3 4 range
A 290.9
(3)
P 		137
(-2.4)
P 		155.4
(-1.7)
P 		119.1
(-3)
P 		172
B 240.1
(3)
P 		168.5
(-1.3)
P 		140.8
(-3)
P 		168.6
(-1.3)
P 		99
C 254.4
(3)
P 		198.2
(0.4)
P 		215.9
(1.2)
P 		126.1
(-3)
P 		128
avr 261.8
(3) 		167.9
(-1.5) 		170.7
(-1.4) 		137.9
(-3) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 123
1 2 3 4 5 6 range
A 174.3
(-3)
P 		244.9
(3)
P 		184.4
(-2.1)
P 		185.9
(-2)
P 		244.5
(3)
P 		179.2
(-2.6)
P 		71
B 272.4
(1.4)
P 		263.9
(0.8)
P 		207.2
(-3)
P 		228.8
(-1.6)
P 		297
(3)
P 		264.3
(0.8)
P 		90
C 281.9
(3)
P 		228.3
(-0.2)
P 		182.5
(-2.9)
P 		181.4
(-3)
P 		215.7
(-1)
P 		245
(0.8)
P 		101
avr 242.9
(2.1) 		245.7
(2.3) 		191.4
(-3) 		198.7
(-2.3) 		252.4
(3) 		229.5
(0.7) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190228_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7249
Sequence Type Exemplar sequence
Representative Public ID T04C9.6 NCBI
Target Description T04C9.6 /REP_DB=WormBase Gene ID /WP=CE04881 /TR=Q9GP93 /GB=AAG01559.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=band 4.1-like domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065902(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065902 NCBI Caenorhabditis elegans FERM domain (protein4.1-ezrin-radixin-moesin) family member (frm-2) (frm-2) mRNA, complete cds. 11/11 None
SNAP00000027251 ENSEMBL cdna:SNAP chromosome:CEL140:III:5976797:5979804:-1 11/11 None
GENEFINDER00000027258 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5976797:5979804:-1 11/11 None
T04C9.6.1 ENSEMBL cdna:known chromosome:CEL140:III:5976734:5981358:-1 gene:T04C9.6 11/11 None
T04C9.6.2 ENSEMBL cdna:known chromosome:CEL140:III:5976734:5980270:-1 gene:T04C9.6 11/11 None
T04C9.6.3 ENSEMBL cdna:known chromosome:CEL140:III:5976747:5982068:-1 gene:T04C9.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5976795-5979803(-) 98.83 100.0
Public Domain and Genome References
Gene Title band 4.1-like domain
Gene Symbol frm-2
Ensembl T04C9.6
Entrez Gene 175848 Entrez gene
SwissProt Q9GP93 EMBL-EBI
WormBase CE29463 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1595104_AT Band4.1-like5 protein cfa
CANINE_2:CFA.120.1.S1_S_AT Band4.1-like5 protein cfa
CANINE:1595105_AT Band4.1-like5 protein cfa
DROSOPHILA_2:1629248_AT yurt dm
DROSGENOME1:153735_AT yurt dm
CHICKEN:GGA.6096.1.S1_AT similar to Band4.1-like5 protein gga
CHICKEN:GGAAFFX.23607.2.S1_S_AT similar to Band4.1-like5 protein gga
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5737 cytoplasm inferred from electronic annotation QuickGO AmiGO
5856 cytoskeleton inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8092 cytoskeletal protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG01559 Ferm domain (protein4.1-ezrin-radixin-moesin) family protein 2 [Caenorhabditis elegans] ref|NP_498303.1| FERM domain (protein4.1-ezrin-radixin-moesin) family member (frm-2) [Caenorhabditis elegans] 0.0
blast T25859 hypothetical protein T04C9.6 - Caenorhabditis elegans 0.0
blast CAE64343 Hypothetical protein CBG09029 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000299 EMBL-EBI Band 4.1 1.8E-71
Pfam IPR000299 EMBL-EBI Band 4.1 9.8E-78
Sequence
Target Sequence 
>C. ELEGANS:190228_S_AT
gagccaatgatcaacagcgaacccatgcaaaatcagatccaacttctccacattcaataa
ttcaaaacgttccattaccaacatctccagacctcaaaaaaccagtaaacaacagtaatc
catttatttcggatcctttaacaccttcatcatcatcatcatcatcctctcataatctgt
cacatgtaactaaaataacagttggaacaattggaaatctcgatactccatcatcttctg
ctgccccatcttcatatattccacgtccagttgtctcaacatccacatcattctcacatc
cgccaccacttccagctcatcagtcaaattcgaaaattcccagaatgagcagtgcatcgg
agcagcggaagagctcacaacctccacaaccagctgttcgaatgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCCAATGATCAACAGCGAACCCA 313 385 1208 Antisense
AAAATCAGATCCAACTTCTCCACAT 512 133 1236 Antisense
CAAAACGTTCCATTACCAACATCTC 48 191 1270 Antisense
TATTTCGGATCCTTTAACACCTTCA 487 659 1332 Antisense
TCATCATCATCCTCTCATAATCTGT 344 621 1363 Antisense
GAAATCTCGATACTCCATCATCTTC 83 363 1421 Antisense
CATCTTCATATATTCCACGTCCAGT 379 213 1454 Antisense
GTCCAGTTGTCTCAACATCCACATC 288 477 1472 Antisense
CACTTCCAGCTCATCAGTCAAATTC 243 197 1514 Antisense
ATGAGCAGTGCATCGGAGCAGCGGA 459 45 1552 Antisense
CTCCACAACCAGCTGTTCGAATGCA 499 235 1589 Antisense
Sequence Source Affymetrix Proprietary Database