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[190227_at] Zinc finger, C2H2 type

Description M163.2 /REP_DB=WormBase Gene ID /WP=CE12448 /TR=Q93902 /GB=CAB01893.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type
Cluster 6grp_total > 20      4grp_total > 36      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 170
1 2 3 4 range
A 272.2
(3)
A 		250.4
(1.8)
A 		160.2
(-3)
A 		263.2
(2.5)
A 		112
B 261.9
(0.5)
A 		315.5
(3)
M 		196.3
(-2.6)
A 		188.3
(-3)
A 		127
C 251.1
(2)
A 		271.8
(3)
A 		145.9
(-3)
A 		203.2
(-0.3)
A 		126
avr 261.7
(2.1) 		279.2
(3) 		167.5
(-3) 		218.2
(-0.3) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 168
1 2 3 4 5 6 range
A 231.3
(3)
A 		217.6
(1.8)
A 		226.1
(2.6)
A 		180.1
(-1.3)
A 		215.1
(1.6)
A 		159.9
(-3)
A 		71
B 203.7
(-0.6)
A 		281.1
(2.6)
A 		292
(3)
A 		235.1
(0.7)
A 		151.8
(-2.7)
A 		144.9
(-3)
A 		147
C 124.8
(-3)
A 		285.1
(3)
A 		235.8
(1.2)
A 		199.1
(-0.2)
A 		123.6
(-3)
A 		156.9
(-1.8)
A 		162
avr 186.6
(-1.2) 		261.3
(3) 		251.3
(2.4) 		204.8
(-0.2) 		163.5
(-2.5) 		153.9
(-3) 		107
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 99.1
(3)
A 		54.4
(-1.4)
A 		41.9
(-2.7)
A 		38.5
(-3)
A 		61
B 83.5
(3)
A 		77.9
(2.2)
M 		45.5
(-2.3)
A 		40.1
(-3)
A 		43
C 83.1
(3)
A 		78.1
(2.4)
A 		50.9
(-1)
A 		34.3
(-3)
A 		49
avr 88.6
(3) 		70.1
(0.8) 		46.1
(-2) 		37.6
(-3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 42.6
(-2.4)
A 		77.4
(3)
A 		49.2
(-1.4)
A 		45.7
(-1.9)
A 		64.9
(1.1)
A 		38.9
(-3)
A 		39
B 70.9
(-0.4)
A 		93.6
(3)
A 		70.9
(-0.4)
A 		62.3
(-1.7)
A 		61.7
(-1.8)
A 		54
(-3)
A 		40
C 46.3
(-2.2)
A 		87
(3)
A 		60
(-0.4)
A 		40
(-3)
A 		40
(-3)
A 		52.5
(-1.4)
A 		47
avr 53.3
(-2.2) 		86
(3) 		60
(-1.2) 		49.3
(-2.9) 		55.5
(-1.9) 		48.5
(-3) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190227_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17643
Sequence Type Exemplar sequence
Representative Public ID M163.2 NCBI
Target Description M163.2 /REP_DB=WormBase Gene ID /WP=CE12448 /TR=Q93902 /GB=CAB01893.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078010(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078010 NCBI Caenorhabditis elegans M163.2 (M163.2) mRNA, complete cds. 10/11 None
GENEFINDER00000011164 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14493781:14498859:1 11/11 None
SNAP00000011162 ENSEMBL cdna:SNAP chromosome:CEL140:X:14496039:14498859:1 10/11 None
M163.2 ENSEMBL cdna:known chromosome:CEL140:X:14496004:14499353:1 gene:M163.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14493780-14498859(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C2H2 type
Ensembl M163.2
Entrez Gene 187492 Entrez gene
SwissProt Q93902 EMBL-EBI
WormBase CE37393 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
15986 ATP synthesis coupled proton transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
16469 proton-transporting two-sector ATPase complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
46933 hydrogen-transporting ATP synthase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
46961 hydrogen-transporting ATPase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01893 Hypothetical protein M163.2 [Caenorhabditis elegans] ref|NP_510411.2| M163.2 [Caenorhabditis elegans] 0.0
blast CAB01893 Hypothetical protein M163.2 [Caenorhabditis elegans] ref|NP_510411.2| M163.2 [Caenorhabditis elegans] 1.0E-134
blast Q17308 Sex-determining transformer protein 1 gb|AAB49336.1| Cb-TRA-1A 2.0E-45
blast CAE67633 Hypothetical protein CBG13188 [Caenorhabditis briggsae] gb|AAB49337.1| Cb-TRA-1B 2.0E-45
blast XP_540363 PREDICTED: similar to GLI-Kruppel family member GLI3 isoform 1 [Canis familiaris] 4.0E-31
blast XP_856306 PREDICTED: similar to GLI-Kruppel family member GLI3 isoform 4 [Canis familiaris] 5.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 2.7E-5
Sequence
Target Sequence 
>C. ELEGANS:190227_AT
gacggccaccaggctcatgtaaagccaactacattccaccaacaaaaatcacggaacaaa
atgatgaagacgtgcgtcagtgtctatgggacgggtgcacattgacacttgacgatcgag
cgaaaccgtattgctgcgactttggaagctgtgcttgtgcctacaccgatccatcgtcac
tcagaaagcatgtaaagtcgaaacatcccgaacatcatgccatgaaaatggctatgcgaa
aaactcaacgaaaatcaataaaacaaattgcttcagagaaagtacaggtaggaacaggca
aagcttcgattttttgtgtctttatgtcgccattgccaacggctgccgaagcaccaattt
cccctcaacagaacttgccaacactgccactcaacatgatcccaccaccactgcagactc
aacttccactacgtgtcccaccattcactggaatgccatttgcgaatccagcactccaac
tctttttggctacgcaaatgagaatggctccgccaatgactccgtttcccctcccgcaac
tcacttctctgaatgtcagcccgcttgacttggctgcgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGGCCACCAGGCTCATGTAAAGC 656 375 974 Antisense
GGACGGGTGCACATTGACACTTGAC 620 523 1062 Antisense
AAACCGTATTGCTGCGACTTTGGAA 300 125 1096 Antisense
TTGGAAGCTGTGCTTGTGCCTACAC 83 707 1115 Antisense
CGATCCATCGTCACTCAGAAAGCAT 488 249 1140 Antisense
AAACATCCCGAACATCATGCCATGA 206 129 1174 Antisense
TTTATGTCGCCATTGCCAACGGCTG 112 673 1294 Antisense
CCAATTTCCCCTCAACAGAACTTGC 322 273 1327 Antisense
CATTTGCGAATCCAGCACTCCAACT 376 213 1430 Antisense
GCAACTCACTTCTCTGAATGTCAGC 38 321 1509 Antisense
TCAGCCCGCTTGACTTGGCTGCGAT 699 623 1529 Antisense
Sequence Source Affymetrix Proprietary Database