[Home] | [Total List]

[190225_s_at] histone H1

Description M163.3 /REP_DB=WormBase Gene ID /WP=CE12450 /GEN=his-24 /TR=Q93901 /GB=CAB01892.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=histone H1
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 27      4grp_highest_8_8 > 04      4grp_high_8_8 > 37      6grp_highest_nonorm > 04      6grp_total > 27      4grp_total > 34      6grp_highest_sub > Cu      6grp_cgc > 05      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2309
1 2 3 4 range
A 3201.9
(-3)
P 		5510.4
(3)
P 		4077.3
(-0.7)
P 		4446.9
(0.2)
P 		2309
B 3703.2
(-3)
P 		4946.5
(3)
P 		3986.5
(-1.6)
P 		4249.6
(-0.4)
P 		1243
C 3389.3
(-3)
P 		4988.6
(3)
P 		3447
(-2.8)
P 		4296.7
(0.4)
P 		1599
avr 3431.5
(-3) 		5148.5
(3) 		3836.9
(-1.6) 		4331.1
(0.1) 		1717

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7758
1 2 3 4 5 6 range
A 9642.6
(3)
P 		5205.6
(-0.5)
P 		2334.2
(-2.7)
P 		1966
(-3)
P 		2630
(-2.5)
P 		6321.9
(0.4)
P 		7677
B 8758.5
(3)
P 		5017.8
(-0.3)
P 		3046.9
(-2)
P 		2291.5
(-2.6)
P 		1885
(-3)
P 		4181.8
(-1)
P 		6874
C 7877.6
(3)
P 		5403.7
(0.5)
P 		2907.9
(-2)
P 		1965.2
(-3)
P 		2359.5
(-2.6)
P 		3166.7
(-1.8)
P 		5912
avr 8759.6
(3) 		5209
(-0.2) 		2763
(-2.4) 		2074.2
(-3) 		2291.5
(-2.8) 		4556.8
(-0.8) 		6685
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 783
1 2 3 4 range
A 1165.8
(2.7)
P 		1196.2
(3)
P 		1065.9
(1.6)
P 		650.9
(-3)
P 		545
B 1180.9
(2.2)
P 		1221.7
(3)
P 		923.8
(-2.7)
P 		905.6
(-3)
P 		316
C 1121.9
(0.4)
P 		1434.3
(3)
P 		1201.4
(1)
P 		724.5
(-3)
P 		710
avr 1156.2
(1.5) 		1284.1
(3) 		1063.7
(0.5) 		760.3
(-3) 		524

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2652
1 2 3 4 5 6 range
A 1777.5
(2.7)
P 		1851.4
(3)
P 		508.3
(-3)
P 		498.6
(-3)
P 		793.6
(-1.7)
P 		1539.2
(1.6)
P 		1353
B 3047.5
(3)
P 		1670.2
(-0.4)
P 		739.9
(-2.7)
P 		606.9
(-3)
P 		765.9
(-2.6)
P 		1559.4
(-0.7)
P 		2441
C 2919.9
(3)
P 		1648.8
(-0)
P 		740.1
(-2.2)
P 		395.2
(-3)
P 		763.5
(-2.1)
P 		1060.1
(-1.4)
P 		2525
avr 2581.6
(3) 		1723.5
(0.5) 		662.8
(-2.5) 		500.2
(-3) 		774.3
(-2.2) 		1386.2
(-0.4) 		2081
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190225_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17503
Sequence Type Exemplar sequence
Representative Public ID M163.3 NCBI
Target Description M163.3 /REP_DB=WormBase Gene ID /WP=CE12450 /GEN=his-24 /TR=Q93901 /GB=CAB01892.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=histone H1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078009(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078009 NCBI Caenorhabditis elegans HIStone family member (his-24) (his-24) mRNA, complete cds. 11/11 A 
SNAP00000011161 ENSEMBL cdna:SNAP chromosome:CEL140:X:14490058:14490787:1 11/11 None
GENEFINDER00000011174 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14490058:14490787:1 11/11 None
M163.3 ENSEMBL cdna:known chromosome:CEL140:X:14490026:14491030:1 gene:M163.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14490057-14490787(+) 93.14 100.0
Public Domain and Genome References
Gene Title histone H1
Gene Symbol his-24
Ensembl M163.3
Entrez Gene 181545 Entrez gene
SwissProt P10771 EMBL-EBI
WormBase CE12450 Wormbase
Functional Annotations
Ortholog
ID Title Organism
HG-U95AV2:580_AT histone 1, H1e hs
HC-G110:580_AT histone 1, H1e hs
HG-U133_PLUS_2:208553_AT histone 1, H1e hs
HG-U133A:208553_AT histone 1, H1e hs
HG-FOCUS:208553_AT histone 1, H1e hs
HG-U133A_2:208553_AT histone 1, H1e hs
HUGENEFL:M60748_AT histone 1, H1e hs
U133_X3P:G4885378_3P_AT histone 1, H1e hs
MOUSE430_2:1422398_AT histone 1, H1e mm
MOE430A:1422398_AT histone 1, H1e mm
MOUSE430A_2:1422398_AT histone 1, H1e mm
MG-U74AV2:94718_AT histone 1, H1e mm
MU11KSUBB:MSA.732.0_AT histone 1, H1e mm
MG-U74CV2:133720_AT Histone 1, H1e (Hist1h1e), mRNA mm
MOE430B:1440330_AT Histone 1, H1e (Hist1h1e), mRNA mm
MOUSE430_2:1440330_AT Histone 1, H1e (Hist1h1e), mRNA mm
MOE430B:1445565_AT Histone 1, H1e (Hist1h1e), mRNA mm
MOUSE430_2:1445565_AT Histone 1, H1e (Hist1h1e), mRNA mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6334 nucleosome assembly inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
786 nucleosome inferred from electronic annotation QuickGO AmiGO
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01892 Hypothetical protein M163.3 [Caenorhabditis elegans] ref|NP_510410.1| HIStone family member (his-24) [Caenorhabditis elegans] sp|P10771|H11_CAEEL Histone H1.1 gb|AAB70665.1| histone H1.1 [Caenorhabditis elegans] 4.0E-31
blast CAA37372 histone H1 [Caenorhabditis elegans] 5.0E-29
blast CAE73994 Hypothetical protein CBG21627 [Caenorhabditis briggsae] 2.0E-27
Protein Domains
Database ID Description E-Value
scop a.4.5.Histone H1/H5 All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; Histone H1/H5 2.00000006274879E-22
Pfam IPR005818 EMBL-EBI Histone H1/H5 3.7E-41
Sequence
Target Sequence 
>C. ELEGANS:190225_S_AT
gtcccaaaggctaaggccgccaaggccgccaagccaaccaaagttgccaaggccaaggct
ccagtcgctcacccaccatacatcaacatgatcaaggaggccatcaagcagctcaaggac
cgcaaaggagcttccaagcaggcaatcctcaagttcatctcccaaaactacaagctcgga
gacaatgtcatccagatcaatgctcatctccgtcaggctctcaagcgtggtgtcaccagc
aaggcccttgttcaagccgccggatccggagccaacggacgtttccgtgtgccagagaag
gccgccgccgccaagaagccagcagcagccaagaagccagcagcagccaagaaacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCCCAAAGGCTAAGGCCGCCAAGG 129 467 55 Antisense
AAGTTGCCAAGGCCAAGGCTCCAGT 352 155 95 Antisense
CTCACCCACCATACATCAACATGAT 315 229 122 Antisense
GGCCATCAAGCAGCTCAAGGACCGC 654 543 153 Antisense
GGACCGCAAAGGAGCTTCCAAGCAG 296 523 171 Antisense
AGCAGGCAATCCTCAAGTTCATCTC 576 75 191 Antisense
TTCATCTCCCAAAACTACAAGCTCG 203 689 208 Antisense
GTGTCACCAGCAAGGCCCTTGTTCA 116 485 284 Antisense
GAGCCAACGGACGTTTCCGTGTGCC 411 381 323 Antisense
GAAGCCAGCAGCAGCCAAGAAGCCA 135 345 369 Antisense
GAAGCCAGCAGCAGCCAAGAAACCA 136 345 387 Antisense
Sequence Source Affymetrix Proprietary Database