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[190224_at] zinc finger protein

Description F36F12.8 /REP_DB=WormBase Gene ID /WP=CE17788 /TR=O76398 /GB=AAC19207.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_total > 99      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 360
1 2 3 4 range
A 119.2
(-3)
A 		141.2
(-2.6)
A 		166.7
(-2.1)
A 		442.9
(3)
P 		324
B 88.3
(-3)
A 		124.5
(-1.2)
A 		130.9
(-0.9)
A 		207.4
(3)
P 		119
C 83.2
(-3)
A 		142.3
(-1.1)
A 		90.5
(-2.8)
A 		266.2
(3)
P 		183
avr 96.9
(-3) 		136
(-1.9) 		129.4
(-2.1) 		305.5
(3) 		209

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 338
1 2 3 4 5 6 range
A 117
(-2.6)
A 		96.5
(-3)
A 		120.6
(-2.5)
A 		120.5
(-2.5)
A 		404.4
(3)
P 		334.7
(1.6)
P 		308
B 109.7
(-2)
A 		66.5
(-3)
A 		71.2
(-2.9)
A 		137.7
(-1.4)
A 		333.5
(3)
P 		273.2
(1.6)
P 		267
C 90.7
(-3)
A 		103.6
(-2.7)
A 		109.4
(-2.6)
A 		175.9
(-1.3)
A 		339.4
(1.9)
P 		394.9
(3)
P 		304
avr 105.8
(-2.6) 		88.9
(-3) 		100.4
(-2.7) 		144.7
(-1.8) 		359.1
(3) 		334.3
(2.4) 		270
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 43.4
(-0.8)
A 		30.7
(-3)
A 		43.6
(-0.7)
A 		64.8
(3)
P 		34
B 28.1
(-3)
A 		30.7
(-2)
A 		30.3
(-2.2)
A 		44.2
(3)
P 		16
C 27.6
(-3)
A 		40.9
(1.6)
A 		31.5
(-1.6)
A 		44.9
(3)
P 		17
avr 33
(-3) 		34.1
(-2.6) 		35.1
(-2.3) 		51.3
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 21.6
(-3)
A 		34.3
(-2.2)
A 		26.3
(-2.7)
A 		30.6
(-2.5)
A 		122
(3)
P 		81.5
(0.6)
P 		100
B 38.2
(-1.9)
A 		22.1
(-2.8)
A 		17.3
(-3)
A 		36.5
(-2)
A 		135.5
(3)
P 		101.9
(1.3)
P 		118
C 33.6
(-2.7)
A 		31.6
(-2.8)
A 		27.8
(-3)
A 		35.4
(-2.6)
A 		109.8
(1.7)
P 		132.2
(3)
P 		104
avr 31.1
(-2.6) 		29.3
(-2.7) 		23.8
(-3) 		34.2
(-2.4) 		122.4
(3) 		105.2
(2) 		99
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190224_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14986
Sequence Type Exemplar sequence
Representative Public ID F36F12.8 NCBI
Target Description F36F12.8 /REP_DB=WormBase Gene ID /WP=CE17788 /TR=O76398 /GB=AAC19207.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071165(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071165 NCBI Caenorhabditis elegans F36F12.8 (F36F12.8) mRNA, complete cds. 11/11 None
SNAP00000033956 ENSEMBL cdna:SNAP chromosome:CEL140:V:2090509:2094186:1 11/11 None
GENEFINDER00000033966 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2086183:2091443:1 11/11 None
F36F12.8 ENSEMBL cdna:known chromosome:CEL140:V:2090509:2091443:1 gene:F36F12.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2090508-2091443(+) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Ensembl F36F12.8
Entrez Gene 185364 Entrez gene
SwissProt O76398 EMBL-EBI
WormBase CE17788 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAE66795 Hypothetical protein CBG12156 [Caenorhabditis briggsae] 1.0E-135
blast AAC19207 Hypothetical protein F36F12.8 [Caenorhabditis elegans] ref|NP_503566.1| F36F12.8 [Caenorhabditis elegans] 1.0E-117
blast CAE73921 Hypothetical protein CBG21533 [Caenorhabditis briggsae] 1.0E-69
blast CAB07203 Hypothetical protein F47H4.1 [Caenorhabditis elegans] ref|NP_507394.1| F47H4.1 [Caenorhabditis elegans] 1.0E-61
blast CAB07203 Hypothetical protein F47H4.1 [Caenorhabditis elegans] ref|NP_507394.1| F47H4.1 [Caenorhabditis elegans] 4.0E-61
blast CAB07491 Hypothetical protein Y6G8.3 [Caenorhabditis elegans] ref|NP_507456.1| Y6G8.3 [Caenorhabditis elegans] 7.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 5.2E-38
Sequence
Target Sequence 
>C. ELEGANS:190224_AT
cgcccgtaagctctacctgaaggagaccgtccgtgatcacatgagaaatgagcactactt
gggtcaagtatacacctgcggatgctgtaactggacgttttccaacaaaaaagccctcac
cgaacacgcaaaggccatacaggaaaccggagctccaggagacgccaacccgattgcgaa
atccggcaattcaccgggatcactgctgaaatcgccaattcaaagagccggcttcaagct
taatcgtcttttgaacaagtctctgtcgccgtcgacttccaattcaacaacgtcctcatc
ttcccgcgacgcttcaggatcgccccaaccggagctggagctgaagctggagccagagcc
agagccagagcccaatgaagaagctctcgagtacaaaagattcttcaacaatgcagtcga
cacaattctacagagaaattttttcaccgatcagcagatcactgaagtcgacacatgggt
cataatcatcgaaagtgcgaatgctcttgcgacggcgcttcagagctacaagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCCCGTAAGCTCTACCTGAAGGAG 409 255 228 Antisense
TGAAGGAGACCGTCCGTGATCACAT 441 575 245 Antisense
ACCTGCGGATGCTGTAACTGGACGT 225 85 301 Antisense
CTCACCGAACACGCAAAGGCCATAC 588 227 343 Antisense
GAGACGCCAACCCGATTGCGAAATC 640 393 386 Antisense
CACCGGGATCACTGCTGAAATCGCC 246 201 419 Antisense
GCCGGCTTCAAGCTTAATCGTCTTT 412 283 454 Antisense
CTTTTGAACAAGTCTCTGTCGCCGT 56 223 475 Antisense
GCCGTCGACTTCCAATTCAACAACG 493 283 495 Antisense
CGAAAGTGCGAATGCTCTTGCGACG 534 249 717 Antisense
CGACGGCGCTTCAGAGCTACAAGAA 284 251 737 Antisense
Sequence Source Affymetrix Proprietary Database